Pairwise Alignments

Query, 609 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 77.8 bits (190), Expect = 1e-18
 Identities = 112/436 (25%), Positives = 173/436 (39%), Gaps = 75/436 (17%)

Query: 122 SEDRSWVVFNLRPEARFHDGKPITAYDVAFSYRTLLTEGHPQYRTNLQEVARVDILNRHR 181
           S D     F LR   ++HDGK  T+ DVA+S   LL + HP+ R     +  +D  +++ 
Sbjct: 88  SPDGLTYTFTLRQGVKWHDGKDFTSADVAYSIE-LLKKIHPRGRNTFANLTAIDTPDKYT 146

Query: 182 -IRFVFKRAGNPLLILRLGELPVLPQHYWKNRD-FKATTFEPPLGSGPYRISKVTPGRQL 239
            I  + K A   +  L   E P++P+H ++  D         P+G+GP++  +   G  +
Sbjct: 147 AILRLSKPAPYLIRALVATETPIVPKHIYEGTDPANNPNNNAPIGTGPFKFKEWVRGSHI 206

Query: 240 VFERVKNYWGKDLPVNRGFYNYDKVEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWANGY 299
           V+ER  +YW K  P        D++ V F  D   A  AF+ G  D+           GY
Sbjct: 207 VYERNNDYWDKPKPF------VDQLIVRFVTDPAAAAVAFETGTVDL-----------GY 249

Query: 300 NFPAVNRGDVIKAQIAHQIPTQSQG---------LFMNSRRPIFSQAKVREALGLMFDFE 350
             P V   D+ + +    +  +++G         L  N     F   KVR+A+    D  
Sbjct: 250 RTP-VPLADLERLKKVPALRFETKGNSYSSNVTRLEFNLDNEYFKNEKVRQAVAHAID-- 306

Query: 351 WTNRTLFSSAYKRTLSYYPNSEFSATGVPTGHEWLMLSPYRDQLPASLFTQPFSLPQTDG 410
                   +   + ++Y             G+  +  SP    L A  F  P   P    
Sbjct: 307 -------RNVIVKVVNY-------------GYGQVSYSPIAPGLKA--FHDPAPSPYA-- 342

Query: 411 RGIPRETMRRALALLGDAGW--KLSGQRLLNKDGQPLRFE-ILLVNPNLERILQPYVENL 467
                  +++A ALL +AG+  K  G R       PL F  I    P L   L+     L
Sbjct: 343 -----FDVKKANALLDEAGFPKKAGGVRF----SVPLDFNPIGADGPRLADYLR---SAL 390

Query: 468 ISIGIDARLRTVDRAQYKQRL-DQFDFDMILITLNQTLSPGLEQWQYFHSSQAAIKG--S 524
             IGI   +R  D + + +R+    DF       +    P +   Q  + S+  IKG   
Sbjct: 391 ARIGIAVTVRAQDPSAFIKRIYTDRDFAFTHNGASNLFDPTVGV-QRLYWSKNFIKGVPF 449

Query: 525 KNYAGIANPIVDHLLE 540
            N     NP+VD LLE
Sbjct: 450 SNGTHYQNPVVDKLLE 465