Pairwise Alignments

Query, 610 a.a., hypothetical protein from Pseudomonas simiae WCS417

Subject, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 85.9 bits (211), Expect = 4e-21
 Identities = 108/460 (23%), Positives = 174/460 (37%), Gaps = 54/460 (11%)

Query: 85  TLAMQSLDEPITEYGLVAGKIEKAPDNSWVRFYLRPEARFHDGHPIRAEDVVFTFQELIK 144
           T  +   D  +     +A K   +PD     F LR   ++HDG    + DV ++  EL+K
Sbjct: 65  TEGLLKYDYDVNPQPQLATKWVISPDGLTYTFTLRQGVKWHDGKDFTSADVAYSI-ELLK 123

Query: 145 EGSPIYRTYYADVDEVVAEDPLKVLFKFKRTNNREL-PLILGQLPVLPKHWWATRDFAKG 203
           +  P  R  +A++  +   D    + +  +     +  L+  + P++PKH +   D A  
Sbjct: 124 KIHPRGRNTFANLTAIDTPDKYTAILRLSKPAPYLIRALVATETPIVPKHIYEGTDPANN 183

Query: 204 -NLEVPLGSGPYKVAEVKAGRMIRYERVKDYWAKDLPITQGFYNFDNRITDYYRDSTVSL 262
            N   P+G+GP+K  E   G  I YER  DYW K  P        D  I  +  D   + 
Sbjct: 184 PNNNAPIGTGPFKFKEWVRGSHIVYERNNDYWDKPKPFV------DQLIVRFVTDPAAAA 237

Query: 263 EALKAGQFD--YWLEFSAKNWANAYNIPAVAQGRLIKEEIPNGNPTGMQGFVFNMRKPMF 320
            A + G  D  Y       +      +PA     L  E   N   + +    FN+    F
Sbjct: 238 VAFETGTVDLGYRTPVPLADLERLKKVPA-----LRFETKGNSYSSNVTRLEFNLDNEYF 292

Query: 321 QDVRVRKAISLLLDFEWSNKQLFNGAYTRTRSYFENSEMAATGLPGPDELAILEPLRGKI 380
           ++ +VR+A++  +D              +  +Y       +   PG         L+   
Sbjct: 293 KNEKVRQAVAHAID---------RNVIVKVVNYGYGQVSYSPIAPG---------LKAFH 334

Query: 381 PPEVFTQAFEPSKTDGSGMIRTQQREAYQLLQEAGWRIVDDKMVDTSGKPVTIEFLLAQT 440
            P     AF+  K             A  LL EAG+     K        V ++F     
Sbjct: 335 DPAPSPYAFDVKK-------------ANALLDEAGF----PKKAGGVRFSVPLDFNPIGA 377

Query: 441 EFERILLPFKRNLADLGIDLVIRRVDVSQFINRI-RSRDFDMLVGSFPQSTSPG-NEQRE 498
           +  R+    +  LA +GI + +R  D S FI RI   RDF            P    QR 
Sbjct: 378 DGPRLADYLRSALARIGIAVTVRAQDPSAFIKRIYTDRDFAFTHNGASNLFDPTVGVQRL 437

Query: 499 FWKSSSADKPGSRNYMGLKDPAIDQLVEE-LIDADSRKSL 537
           +W  +        N    ++P +D+L+E+  ++ D  K L
Sbjct: 438 YWSKNFIKGVPFSNGTHYQNPVVDKLLEDAAVENDPGKRL 477