Pairwise Alignments

Query, 610 a.a., hypothetical protein from Pseudomonas simiae WCS417

Subject, 604 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  427 bits (1097), Expect = e-124
 Identities = 242/597 (40%), Positives = 336/597 (56%), Gaps = 17/597 (2%)

Query: 13  LLCTAAQAAPQHALTLYNEPPKYPADFKHFDYVNPDAPKGGTFR---ESAMGGFDSLNPY 69
           L+  A  A   H   L+++  KY  DFK FDYV+P APKGG  R      +  FD  NP+
Sbjct: 9   LMVCAVPAWAAHGYALWDDL-KYGPDFKAFDYVDPAAPKGGELRLVSNLRVSTFDKYNPF 67

Query: 70  ISKG-VPADNLGLIYDTLAMQSLDEPITEYGLVAGKIEKAPDNSWVRFYLRPEARFHDGH 128
             KG  PA    L++DTL   S+DE  + YGL+A  +  APD   V F LRPEARFH+G 
Sbjct: 68  TIKGSAPAYLDSLLFDTLLTGSMDETASGYGLLAEDVTVAPDRRSVTFRLRPEARFHNGM 127

Query: 129 PIRAEDVVFTFQELIKE-GSPIYRTYYADVDEVVAEDPLKVLFKFKRTNNRELPLILGQL 187
           P+ A DV  ++  LI    SP Y+T   +VD     D   + F+FK T NRELPLI+G L
Sbjct: 128 PVEAADVKHSYDTLIGPYTSPGYKTLLQEVDGADVIDARTIRFRFK-TPNRELPLIVGSL 186

Query: 188 PVLPKHWWA----TRDFAKGNLEVPLGSGPYKVAEVKAGRMIRYERVKDYWAKDLPITQG 243
           P+  + W       + F +  +++P+GSG YK+  V+ G+ I Y R   YWA+DLP+ +G
Sbjct: 187 PIFSRAWGVENGKAKPFDQVVMDIPIGSGAYKIGPVRFGKDITYVRDPGYWARDLPVNRG 246

Query: 244 FYNFDNRITDYYRDSTVSLEALKAGQFDYWLEFSAKNWANAYNIPAVAQGRLIKEEIPNG 303
            +NFD      Y+D+T  LEALKAG+FD    +SA +WA   N      G L+K E  + 
Sbjct: 247 SHNFDRITVKIYKDNTARLEALKAGEFDMMSFYSAGDWARRVNGKRFNTGELVKREFQHK 306

Query: 304 NPTGMQGFVFNMRKPMFQDVRVRKAISLLLDFEWSNKQLFNGAYTRTRSYFENSEMAATG 363
            P G Q FV N R+   +D RVR+A+ L LD+EW N+Q+F G Y R    F N++  A G
Sbjct: 307 KPAGFQSFVLNSRRDKLKDPRVREALGLALDYEWMNRQMFYGGYPRVTDLFGNTDCEAKG 366

Query: 364 LPGPDELAILEPLRGKIPPEVFTQAFEPSKTDGSG-MIRTQQREAYQLLQEAGWRIVDDK 422
           LP P+E A+LEP RGKIP   F   + P  T+G G  +R   R A  LL+EAGW   D  
Sbjct: 367 LPSPEEKALLEPWRGKIPDASFGPMYTPPTTEGEGHSLRNNLRRARDLLKEAGWEYRDGA 426

Query: 423 MVDTSGKPVTIEFLLAQTEFERILLPFKRNLADLGIDLVIRRVDVSQFINRIRSRDFDML 482
           + +  G+ +T+E+L ++    R + P+ RNL  LGI L    VD + +  R+   DFD+ 
Sbjct: 427 LRNAKGERMTLEYLDSKEGGVRTVSPWVRNLEKLGITLNFATVDFALYQERLDRFDFDIT 486

Query: 483 VGSFPQSTSPGNEQREFWKSSSADKPGSRNYMGLKDPAIDQLVEELIDADSRKSLVAHAK 542
             +FP + +PG    E + S +A    S NYMG+  PAID L+++++DAD++  L+   +
Sbjct: 487 TINFPGTNNPGQSLLEIFGSKAAKTESSGNYMGVSTPAIDALLKDIVDADTKAELMPACR 546

Query: 543 ALDRVLQFGYYVIPNWHIKTFRVAYWD-HLGHPKVPPRYDVG----TATWWAKPDVK 594
           ALDRV+   +Y+IP W + + R+ Y D  L      P Y  G      TWWAK   K
Sbjct: 547 ALDRVIMHSHYLIPQWTLTSHRIVYDDWRLSFKSPMPPYAGGEDWVMGTWWAKQPPK 603