Pairwise Alignments

Query, 619 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 542 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 78.2 bits (191), Expect = 9e-19
 Identities = 105/434 (24%), Positives = 168/434 (38%), Gaps = 73/434 (16%)

Query: 117 DGLSLRFFLNPKARFADGKPITAEDVRYSFDLLMTQGSLRFRTLFADVKHVEVEGERQVR 176
           DGL   F L    R+ DGKP T+ DV +S  LL  Q   R R  F+ V  V         
Sbjct: 101 DGLQYTFTLRRGVRWHDGKPFTSADVAHSIGLLK-QYHPRGRATFSSVAEVRTPDAYTAV 159

Query: 177 FDFSSNENRTLP-LDIATLPVFPEHWWKTRDFANGGGYEAPLGSGPYKVSKIDSGSTITF 235
              S      L  L  +  P+ P H +++          AP+G+GP+   +   GS +T+
Sbjct: 160 LVLSKPVPYLLTALSASESPIVPRHLYESGKADANPANNAPIGTGPFVFKEWVRGSHVTY 219

Query: 236 TRDPNWWGKDLPVSRGLYNFDHLSLEYFGDTEVARQVLRGGAYDFNREFSATGYSIGYNG 295
            R+P++W    P        D L + +  D       +  G    +             G
Sbjct: 220 ERNPDYWDNPKPY------VDRLIVRFIPDAAARAAAIEKGEVHLS------------PG 261

Query: 296 PALDDGRLQRAHLAKEMPQPAQGY---------VFNVQKPVFKDRRVRQALAMLWDFEWA 346
             +  G ++R      +     GY          FN++ P  +D RVRQA+A        
Sbjct: 262 TPVPLGDVERLRAKPNLVFEPNGYQYINNVSRVEFNLENPALQDLRVRQAIA-----HAI 316

Query: 347 NRQMMRNMYIRQQSFFSNSPLAATQPPTQEELAILEPLRGQVPDEVFTQVFKAPVTDGSG 406
           NRQ+     +++  ++    L                    +P  V   + K  V D   
Sbjct: 317 NRQV-----VQKTVWYGQGQL--------------------IPGPVHPALRKFYVPDLPV 351

Query: 407 MIRDKQLQALALLEEAGW---KPHGDKLVNAEGEPLEFTFLNAQSGLERLLLPYKRNLAQ 463
           +  D + +A ALL+ AG+   K  G+  +     P+      +  G +R     K++L +
Sbjct: 352 LPHDVK-RAEALLDAAGFVRGKAGGNLRLKLAVVPI------SNEGGQRTAEYLKQSLGR 404

Query: 464 IGITLNIRRIDASQYVNRVMA-RDYDMIVTGFPVTTSPGMELYNYFGSAAAFDPGA--NN 520
           IGI + I   D + YV RV A R +D+ V+    T  P + +   + S   F  G   +N
Sbjct: 405 IGIEVTIHSQDFATYVRRVYADRAFDLHVSVMSNTFDPTVGIQRLYWS-KNFKKGLPFSN 463

Query: 521 YMVLKDPAVDSLIK 534
                +P VD L++
Sbjct: 464 GSGYSNPEVDRLLE 477