Pairwise Alignments

Query, 340 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 290 a.a., putative Opine ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  138 bits (347), Expect = 2e-37
 Identities = 79/226 (34%), Positives = 130/226 (57%), Gaps = 3/226 (1%)

Query: 117 PPSAVNWLGTDDQSRDVLARVIFGARVSILFALALTAISAAIGIAAGALQGYYGGWVDLI 176
           PPSA  WLGTD   RDVL+R+I+G RVS+L       I+  +G A G + GY GG  D +
Sbjct: 61  PPSAEFWLGTDTYGRDVLSRLIYGTRVSLLVGFVAVMIAMVVGSALGVIAGYVGGITDRL 120

Query: 177 GQRVLEVWSGLPVLYLLIILSGFVEPNFWWLLGIMALFSWLALVDVVRAEFLHGRNLEYV 236
               ++V    P L L ++++  +  +   L+  +A+      V + RA  +  +  ++V
Sbjct: 121 ITGFVDVLLSFPTLLLGLMVAAMLGASLENLIIAIAITEIAPFVRIARAPTIALKQRDFV 180

Query: 237 KAARALGLGDGKIIRRHILPNAMTATLSYLPFILTGAISTLSALDFLGFGMPAGSASLGE 296
           +A R+LG G G+++  HILPN ++  L      +  AI T ++L F+G G+P  + + G 
Sbjct: 181 EAGRSLGYGPGRLMTVHILPNMISEVLVLGALWMATAIRTEASLSFIGLGVPPPAPTWGS 240

Query: 297 LIAQGKQNLQAPWLGLTAFFTLALILSLLV--FIGEALRDAFDPRS 340
           +I +G +N+   W  LT F +LA++L++L    +G+ALRDA DP++
Sbjct: 241 MIREGFENILDAW-WLTVFPSLAILLTVLALSLLGDALRDANDPKT 285