Pairwise Alignments

Query, 523 a.a., microcin ABC transporter ATP-binding protein from Pseudomonas simiae WCS417

Subject, 616 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  442 bits (1138), Expect = e-128
 Identities = 247/554 (44%), Positives = 349/554 (62%), Gaps = 34/554 (6%)

Query: 3   LIEIRDLSVAF----SGQTVVRNLSLDVRPGECLALVGESGSGKSVTAHSILQLLPEAGT 58
           ++ +++L+ +F      ++VVRN+S D+ P E +A+VGESGSGKSVT+ SI++LL    +
Sbjct: 18  VLSVQNLTTSFRVDGGWKSVVRNMSFDIAPRETVAIVGESGSGKSVTSLSIMRLLDRKTS 77

Query: 59  ETTGSIQYRGQELIGASAATLQKLRGNRIAMIFQEPMTSLNPLHSIEKQIGETLLLHKGL 118
              G +   G++L+      ++K+RG  I+MIFQEPMTSLNP+  I KQI E L +H+ +
Sbjct: 78  RIEGKVMLGGRDLLALPEEEMRKVRGKDISMIFQEPMTSLNPIFPIGKQIAEALTVHQDI 137

Query: 119 GGKAAQARILELLDLVGIQKPQERLKAYPHQLSGGQRQRVMIAMALACEPELLIADEPTT 178
              AA+A ++ LL+ V I     R   YPHQ SGG RQRVMIAMALA +P+LLIADEPTT
Sbjct: 138 SSSAAKAEVIRLLEKVRIPNAASRFGDYPHQFSGGMRQRVMIAMALASKPKLLIADEPTT 197

Query: 179 ALDVTVQRKILLLLKSLQKRLGMSLLLISHDLNLVRSIAQRVCVMRAGEIVEQADCQTLF 238
           ALDVT+Q +IL L+K LQ+  GMS+L I+HD+ +V  +A R  VM  G++VE      +F
Sbjct: 198 ALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMFRGDVVETGTTDDIF 257

Query: 239 NAPQHPYSRLLLDAEPDADALCS---------------------DERETV-------LQV 270
           +  QHPY+R LL A P   ++ S                     + ++TV       L V
Sbjct: 258 HRGQHPYTRALLSAVPKLGSMRSRLLPARFPIIDIKTGESPPVVETKDTVSGGKTPILSV 317

Query: 271 DDLTVQFRLGGGLFRRKT-YLRAVDGISLSVQRGKTLGIVGESGSGKSTLGQAILRLLDS 329
            DLT +F +  GLF RK+  + AV+ +S  +  G+TL +VGESG GKST G++I RL++ 
Sbjct: 318 KDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGRSITRLIEP 377

Query: 330 T-GSIRFQGEALDPLNNQQMRPWRKQMQVVFQDPYGSLSPRMTVEQIISEGLEVHAPCSL 388
           T G++   G  +  L+   +R  R+ +Q+VFQDP+ SL PRM+V   I E    H     
Sbjct: 378 TSGNVTLDGYEVLKLDRTTLRTMRRSVQMVFQDPFASLDPRMSVGTAIMEPFMEHRLGQK 437

Query: 389 ADRDAQVIQVLKDVGLDPASRHRYPHEFSGGQRQRIAIARALVLKPALMLLDEPTSALDR 448
           A    +   +L+ VGL P    R+PHEFSGGQRQRIAIAR+L+L P +++ DE  SALD 
Sbjct: 438 AQAREKAADLLEKVGLSPDMMKRFPHEFSGGQRQRIAIARSLMLDPKVIVADEAVSALDV 497

Query: 449 TVQKQVVALLRELQDKYGLTYLFISHDLAVVRAMAHDMIVIKDGQVVERGASHAVFDAPQ 508
           +++ QV  LL +LQ    L +LFISHD+AVV  ++H + V+  G++VE G   AVFD PQ
Sbjct: 498 SIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVFDNPQ 557

Query: 509 HPYTKELLAAAHIP 522
           HPYTK+L++A  +P
Sbjct: 558 HPYTKKLMSAVPVP 571



 Score =  172 bits (436), Expect = 3e-47
 Identities = 100/267 (37%), Positives = 161/267 (60%), Gaps = 20/267 (7%)

Query: 3   LIEIRDLSVAFSGQT-----------VVRNLSLDVRPGECLALVGESGSGKSVTAHSILQ 51
           ++ ++DL+  F  ++            V  +S D+  GE L+LVGESG GKS T  SI +
Sbjct: 314 ILSVKDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGRSITR 373

Query: 52  LLPEAGTETTGSIQYRGQELIGASAATLQKLRGNRIAMIFQEPMTSLNPLHSIEKQIGET 111
           L+      T+G++   G E++     TL+ +R + + M+FQ+P  SL+P  S+   I E 
Sbjct: 374 LIEP----TSGNVTLDGYEVLKLDRTTLRTMRRS-VQMVFQDPFASLDPRMSVGTAIMEP 428

Query: 112 LLLHKGLGGKA-AQARILELLDLVGIQKPQERLKAYPHQLSGGQRQRVMIAMALACEPEL 170
            + H+ LG KA A+ +  +LL+ VG+    + +K +PH+ SGGQRQR+ IA +L  +P++
Sbjct: 429 FMEHR-LGQKAQAREKAADLLEKVGLSP--DMMKRFPHEFSGGQRQRIAIARSLMLDPKV 485

Query: 171 LIADEPTTALDVTVQRKILLLLKSLQKRLGMSLLLISHDLNLVRSIAQRVCVMRAGEIVE 230
           ++ADE  +ALDV+++ ++  LL  LQ+ L ++ L ISHD+ +V  ++ RV VM  GEIVE
Sbjct: 486 IVADEAVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVE 545

Query: 231 QADCQTLFNAPQHPYSRLLLDAEPDAD 257
                 +F+ PQHPY++ L+ A P  D
Sbjct: 546 IGPRAAVFDNPQHPYTKKLMSAVPVPD 572