Pairwise Alignments

Query, 469 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 478 a.a., sigma-54 dependent DNA-binding response regulator from Sphingobium sp. HT1-2

 Score =  247 bits (631), Expect = 5e-70
 Identities = 161/397 (40%), Positives = 220/397 (55%), Gaps = 31/397 (7%)

Query: 96  LVVMRLPIHNEAGAVIGAIGFALFDEL-RNLSPLIERYLSMQQEL--ASTRSLLRSRQSK 152
           L ++ L  HN     + A+     D L + ++P  ER L+        + R  LR    K
Sbjct: 82  LPILVLTAHNSVAVAVQAMRAGATDYLSKPIAP--ERLLAALNATLEGNVRGELRPLTEK 139

Query: 153 YN----FAHFIGTSAASLEVKRRARRSASAESPVLLLGETGTGKELLAQAIHGASSRAHK 208
            +    F   +G +         A ++A A  PVL+ GE+G GK+++A+AIH AS R  +
Sbjct: 140 ISAPLAFEDVVGAAPQFRTALAIAAKAARARVPVLIEGESGVGKDVVARAIHAASPRHKQ 199

Query: 209 AFVSINSAAIPADLLEAEFFGTAPGAFTGA-DRKGRPGKFQIAQGGTLFLDEIGDMPLPL 267
           A V++N  AIPA+L+E+E FG   GAFTGA DR    GKF  A  GT+FLDE+ +MPL  
Sbjct: 200 AMVTVNCGAIPANLVESELFGHERGAFTGAFDR--HVGKFLSADMGTIFLDEVSEMPLDA 257

Query: 268 QSKLLRVLQEKEFEPVGSNEMLHSDVRVIAATSMDLEAAIKRGEFRADLYYRLNVLPIQV 327
           Q KLLRVLQ+ E +P+G+   +H DVRVIAAT+  L   I+ G FR DLYYRLNV+ + V
Sbjct: 258 QVKLLRVLQDGEVQPIGARRPVHVDVRVIAATNKKLSDEIEAGRFREDLYYRLNVVQLTV 317

Query: 328 PPLRERLEDIPALSEAILEELRSQH-----ELDREALALLAQHAWPGNIRELRNVLERAA 382
           PPLRER+ DIPAL   +L  + +Q       L  +ALALL QH WPGN+R+L+N L RAA
Sbjct: 318 PPLRERMGDIPALCRHLLARIATQPGLRGLGLTDDALALLMQHDWPGNVRQLQNALFRAA 377

Query: 383 LLSDDLVLDAREI---------RAAIG-----TFTPVERASAVAAVEGESFSAARERFDR 428
           +L +   L   +          R A G       TP   A+ +   EG+         + 
Sbjct: 378 VLCEGDALTPHDFPQVAAHILSRGASGPRQRAAATPPREAAGITLFEGDGHVRQLAEIEA 437

Query: 429 QVIGAALRACEGNVIEAANRLGLGRSTLYKKMVALDL 465
            VI  A+    G + E A RLG+GRSTLY+K+  L +
Sbjct: 438 DVIRLAIGHYRGRMTEVARRLGIGRSTLYRKLAELGI 474