Pairwise Alignments

Query, 469 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 650 a.a., Sigma-54 dependent sensory box protein from Pseudomonas putida KT2440

 Score =  250 bits (639), Expect = 9e-71
 Identities = 177/485 (36%), Positives = 250/485 (51%), Gaps = 66/485 (13%)

Query: 9   DYQQVRGLAIQSLFEIIEQSSEGTVIVDRDANIVWMNERYAKRFGLKSADEAIGQPCEQV 68
           D Q+V     + L  ++     G   VD    +  +N   A+   L     A+G+P +Q+
Sbjct: 195 DTQRVEIAKRRHLNAVLRHIPAGVAAVDNQGVVQSLNPALAQLLDLP-VSAALGRPLQQL 253

Query: 69  ISNSLLRQVVRNDQPILLDIQDTPKGPLVVMRLPIHNEAGAVIGAIGFALFDELRNLSPL 128
                L+Q           +Q+       VMRL  H    AV+            NL P+
Sbjct: 254 CPELDLQQA----------LQEGTGEENRVMRLGSH----AVVS-----------NLLPI 288

Query: 129 IER------YLSMQQELASTRSLLRSRQSK--------YNFAHFIGTSAASLEVKRRARR 174
           +E        L+ Q      R+  R R ++        Y      G S A+ E+ + A+R
Sbjct: 289 LENGERTGLVLTCQDITVVQRADQRIRSTRRPGAFTARYRLDQLNGNSKANREMLQLAKR 348

Query: 175 SASAESPVLLLGETGTGKELLAQAIHGASSRAHKAFVSINSAAIPADLLEAEFFGTAPGA 234
            A++ S +L+ GE+GTGKELLAQ IH  S R    FV+IN AA P  LLE+E FG   GA
Sbjct: 349 FATSHSTILITGESGTGKELLAQGIHNESPRRQGPFVAINCAAFPESLLESELFGYEEGA 408

Query: 235 FTGADRKGRPGKFQIAQGGTLFLDEIGDMPLPLQSKLLRVLQEKEFEPVGSNEMLHSDVR 294
           F+G+ + G+PG F+ A  GTLFLDEIGDMP+ LQ++LLRVLQE+E   +GS E +  DVR
Sbjct: 409 FSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGSTEPIAIDVR 468

Query: 295 VIAATSMDLEAAIKRGEFRADLYYRLNVLPIQVPPLRERLEDIPALSEAILEELRSQ--- 351
           +IAAT  DL +A+  G+FR DLY+RLN+L +Q  PLRER EDI  +   I + L  Q   
Sbjct: 469 IIAATHKDLRSAMDDGDFRTDLYFRLNILRLQTTPLRERPEDIALICRGISQRLLVQGQP 528

Query: 352 ---HELDREALALLAQHAWPGNIRELRNVLERAALLSDDLVLDAREIRAAIGTFTPVERA 408
               ++    L  L ++AWPGN+REL NV+ERA L + +L+ + R     +    P    
Sbjct: 529 PGAADIPAALLPYLERYAWPGNVRELENVIERAMLSARELLEEHRVNEQYLARVLP---- 584

Query: 409 SAVAAVEGESFSAARER----FDRQVIG---------AALRACEGNVIEAANRLGLGRST 455
                 EG   S AR++     D   IG           L +C GN+ EAA RLG+ R+T
Sbjct: 585 ---ELCEGPPPSPARKKSSGETDLHTIGKVAQLRHVKETLESCRGNLDEAARRLGISRTT 641

Query: 456 LYKKM 460
           L++++
Sbjct: 642 LWRRL 646