Pairwise Alignments

Query, 220 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 220 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  125 bits (313), Expect = 8e-34
 Identities = 64/209 (30%), Positives = 114/209 (54%)

Query: 1   MNYQLNFAAVWRDFPSLLAGLGLGLELALLSIAIGCVIGLMMAFAMLSKHRALRVFASVY 60
           MN + +F AV  ++P LL G+   + L  +   +G ++G   A+A  +    LR+    Y
Sbjct: 1   MNIEFDFGAVLSEWPLLLRGVAWTIGLTAVGTVLGMIVGTFCAWARANGPAWLRIVVGTY 60

Query: 61  VTVVRNTPILVLILLIYFALPNLGIRLDKIPSFIITLSLYAGAYLTEVFRAGLLNIPKGL 120
           V ++RNTP +V +  I+F LP  G++L    + +I + L  GAY TE+ RAG+   PKG 
Sbjct: 61  VELIRNTPFIVQLFFIFFGLPAAGVKLSPEVASVIAMVLNLGAYSTEIIRAGIEATPKGQ 120

Query: 121 REAGLAIGLGEWRIRAYITVPVMLRNVLPALSNNFISLFKDTSLAAAIAVPELTYYARKI 180
            EA +++ L + ++   + +P  L+ V PA+ +  + +   +++   I+  EL+Y A  I
Sbjct: 121 IEAAVSLALSKSQVFLRVVLPPALKKVWPAMVSQIVIVMLGSAVCGQISTEELSYAANLI 180

Query: 181 NVESYRVIETWLVTTALYVAACYLIAMLL 209
              ++R  E ++V T +Y+A    +  LL
Sbjct: 181 QSRNFRAFEAFIVATLIYLALSVALRRLL 209