Pairwise Alignments

Query, 220 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 249 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  146 bits (368), Expect = 4e-40
 Identities = 74/220 (33%), Positives = 129/220 (58%)

Query: 1   MNYQLNFAAVWRDFPSLLAGLGLGLELALLSIAIGCVIGLMMAFAMLSKHRALRVFASVY 60
           M Y L+FA +   +P  + G  L L++  L++ IG  +G ++AFA  SK R L    ++Y
Sbjct: 1   MKYSLDFAPLASYWPVFINGAWLTLKMTALAVVIGVAVGTLVAFAKRSKIRLLSRACTIY 60

Query: 61  VTVVRNTPILVLILLIYFALPNLGIRLDKIPSFIITLSLYAGAYLTEVFRAGLLNIPKGL 120
           + +VRNTP LV I L+YF L + G+R+    + ++ + +   AY  E+ RAGL ++P+G 
Sbjct: 61  IEIVRNTPFLVQIFLLYFGLASFGVRMPTFAAAVLAMVINIAAYAAEIIRAGLESVPRGQ 120

Query: 121 REAGLAIGLGEWRIRAYITVPVMLRNVLPALSNNFISLFKDTSLAAAIAVPELTYYARKI 180
            EA   +GL +WRI  ++ +   +  V PAL++ F+ + + +++A+ I+  ELT  A  +
Sbjct: 121 IEAAECLGLSKWRIGWHVMLQPSIEKVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180

Query: 181 NVESYRVIETWLVTTALYVAACYLIAMLLRYLEQRLAIRR 220
             +++R +ET++V  ALY+     I ++   L + L  RR
Sbjct: 181 QSDTFRSLETYIVVAALYLVLSLFIKLVTWALGEYLFRRR 220