Pairwise Alignments

Query, 282 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 254 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 87.4 bits (215), Expect = 3e-22
 Identities = 67/252 (26%), Positives = 109/252 (43%), Gaps = 12/252 (4%)

Query: 20  SLASIVQAADSKLDDVLKRGHLIVGTGSTNAPWHFQGADGKLQGFDIDIGRIVAKGLFND 79
           SL  +  AA   L    +   L V + +T AP+ F+  D ++ GFDIDI   +AK     
Sbjct: 9   SLGLVATAATFALGAQAQNRELTVASSATYAPFAFENKDKQIVGFDIDIINAIAK---QQ 65

Query: 80  PSKVEFVVQSSDARIPNLLTDKVDMSCQFITVTASRAQQVAFTLPYYREGVGLLLPNNSK 139
             K++ V          L    VD+    +T+   R Q   FT PY+     + LP NSK
Sbjct: 66  GLKIKIVNTPFTGIFGALNNGDVDLVISGVTINDKRKQSYDFTPPYFAARQLIALPKNSK 125

Query: 140 YKEIEDLQAAGDGVTVAVLQNVYAEELVHQALPKAKVD--QYDSVDLMYQAVNSGRADAA 197
              ++DL     G  +AV+    A+++  +   K   D  +++S  L+   +  G  DAA
Sbjct: 126 VTSLKDLA----GKKIAVVSASTADDIASREFGKTSPDIRRFESTPLIISELAGGGVDAA 181

Query: 198 ATDQSSVKYLMVQNPGRYRSPAYAWSPQTYACAVKRGDQDWLNFVNTALHEAMTGVEFPT 257
             D   + Y + QNP        ++  + +   VK+GD+  L+ +   L          +
Sbjct: 182 MGDNGVIAYRVAQNPDLKTIDDKSFPEEGFGIVVKKGDKALLDKLTAGLAAIRAD---GS 238

Query: 258 YKASFKQWFGVD 269
           Y   +K+WF  D
Sbjct: 239 YVTIYKKWFNKD 250