Pairwise Alignments

Query, 335 a.a., xylitol ABC transporter, substrate-binding component (from data) from Pseudomonas simiae WCS417

Subject, 320 a.a., ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

 Score = 90.5 bits (223), Expect = 5e-23
 Identities = 77/269 (28%), Positives = 131/269 (48%), Gaps = 22/269 (8%)

Query: 2   KLGTTLAATAALSLLACSIAMAADGKTYKVG--AAVYGLKGQFMQNWVRELKEHPAVKDG 59
           +L  T  A AA + L    A+AA+     V   AA +   G  +  W  + K+    +  
Sbjct: 7   RLALTAVAAAAFASLP---ALAAEKVNLGVSIPAATHSFMGG-INYWANQAKKDLEKEHK 62

Query: 60  TVQLTVFDGNYDALTQNNQIENMVT-QRYDAILFVPIDTKAGVGTVKAAMSNDVVVIASN 118
            +++T+     +A  Q NQ++++ T  + +A++  P ++ A    V    +    V   +
Sbjct: 63  DLKITIKTAA-NAPEQANQLQDLSTVTKINALVVFPFESAALTKPVAQVKAKGAYVTVVD 121

Query: 119 TKVADASVP--YVGNDDVEGGRLQAQAMVDKLNGKGNVVIIQGPIGQSAQIDREKGELEV 176
             + D S    YV  D+   G++ A+ +V +LNGKGNVV ++G I  +   +R      V
Sbjct: 122 RGLTDTSAQDAYVAGDNTAFGKIPAEYIVKQLNGKGNVVALRG-IATTLDNERMDAFNAV 180

Query: 177 LGKHPDIKIIEKKTANWDRAQALALTEDWLNAHPKGINGVIAQNDDMALGAVQALKS--- 233
           L   PDIK+++ K ANW+R  A  +T+D+L    K I+ + A +DDMA+G ++A+     
Sbjct: 181 LKGSPDIKLLDAKYANWNRDDAFKVTQDYLTRF-KNIDAIWAADDDMAVGVLKAISQAKR 239

Query: 234 -------HGLTSKDVPVTSIDGMPDAIQA 255
                   G  +KD+  T +DG    I A
Sbjct: 240 DDIKIVFGGAGAKDMVKTIMDGKDPRITA 268