Pairwise Alignments

Query, 192 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 225 a.a., RNA polymerase sigma factor RpoE from Variovorax sp. SCN45

 Score = 75.9 bits (185), Expect = 5e-19
 Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 15/191 (7%)

Query: 2   KDSDPDVELLVRIGNNDPAAVNEMVTRKLPRLLALASRILGDADEAKDVAQESFLRIWRQ 61
           +  + D +L+ R    D  A   +V +   R+  L  R++ D D  +D+AQE+F+R +R 
Sbjct: 24  RPGEVDFQLVQRTVAGDQKAFELLVIKYQRRIERLIGRMVRDVDLIEDIAQETFIRAYRA 83

Query: 62  AASWRSGEARFDTWLHRVALNLCHDRLRRRKQ---------RPLSEEEVLELADSAAP-L 111
              +R GEA+F TWL+R+A+N     L   K+         RP SE+E         P  
Sbjct: 84  LHQFR-GEAQFYTWLYRIAVNTAKKALVDMKRDPTVSEAALRPSSEDEDETYRPGNEPTT 142

Query: 112 DEQLES---ADRSAR-MAAALAALPERQREAIVLQYYQELSNIDAAALMNISVEALESLL 167
           DE  ES   A+  AR + AA+ ALP   R+A+ L+  + +S  + A +M+  +  + S +
Sbjct: 143 DETPESVLAANEIARAVEAAMEALPAELRQAVTLREIEGMSYEEIAEVMDCPIGTVRSRI 202

Query: 168 SRARRQLRSQL 178
            RAR  + +++
Sbjct: 203 FRAREAISARV 213