Pairwise Alignments

Query, 192 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 193 a.a., RNA polymerase sigma E factor from Pseudomonas putida KT2440

 Score = 81.3 bits (199), Expect = 1e-20
 Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 12/188 (6%)

Query: 1   MKDSDPDVELLVRIGNNDPAAVNEMVTRKLPRLLALASRILGDADEAKDVAQESFLRIWR 60
           M   + D +L+ R+   D  A + +V +   ++L L  R + D  EA+DVAQE+F++ +R
Sbjct: 1   MLTQEEDQQLVERVQRGDRRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYR 60

Query: 61  QAASWRSGEARFDTWLHRVALNLCHDRLRRRKQRPLSEE---EVLELADSAAPLDEQLES 117
              ++R G++ F TWL+R+A+N   + L  R +RP   +   E  E  D    L + LES
Sbjct: 61  ALGNFR-GDSAFYTWLYRIAINTAKNYLVSRGRRPPDSDVSSEDAEFYDGDHGL-KDLES 118

Query: 118 ADRS-------ARMAAALAALPERQREAIVLQYYQELSNIDAAALMNISVEALESLLSRA 170
            +RS         +   +  LPE  R A+ L+ +  LS  D A++M   V  + S + RA
Sbjct: 119 PERSLLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRA 178

Query: 171 RRQLRSQL 178
           R  +   L
Sbjct: 179 REAIDKAL 186