Pairwise Alignments

Query, 192 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 191 a.a., RNA polymerase sigma E factor from Escherichia coli BL21

 Score = 68.2 bits (165), Expect = 9e-17
 Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 11/187 (5%)

Query: 1   MKDSDPDVELLVRIGNNDPAAVNEMVTRKLPRLLALASRILGDADEAKDVAQESFLRIWR 60
           M +   D  L+ R+   D  A N +V R   ++ +L SR +   D   DV QE+F++ +R
Sbjct: 1   MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGD-VPDVVQEAFIKAYR 59

Query: 61  QAASWRSGEARFDTWLHRVALNLCHDRLRRRKQRPLSEE-EVLELA--DSAAPLDE---- 113
              S+R G++ F TWL+R+A+N   + L  + +RP S + + +E    +S   L E    
Sbjct: 60  ALDSFR-GDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNP 118

Query: 114 --QLESADRSARMAAALAALPERQREAIVLQYYQELSNIDAAALMNISVEALESLLSRAR 171
              + S +    +   + +LPE  R AI L+    LS  + AA+M+  V  + S + RAR
Sbjct: 119 ENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 178

Query: 172 RQLRSQL 178
             + +++
Sbjct: 179 EAIDNKV 185