Pairwise Alignments

Query, 833 a.a., ligand-gated channel from Pseudomonas simiae WCS417

Subject, 812 a.a., TonB-dependent receptor from Pseudomonas simiae WCS417

 Score =  449 bits (1155), Expect = e-130
 Identities = 294/848 (34%), Positives = 439/848 (51%), Gaps = 72/848 (8%)

Query: 9   HPLALSVAMAFAAVPLLTVQSTHAEESSSAVGRFSIPAGDLSQALNSLAEQAGLVLAFDA 68
           H +  S+ +  AA   + V ST A  ++SAV  + I AG L  AL+  A +A ++L+F  
Sbjct: 14  HGMTCSLLLGTAATAGV-VLSTDAM-AASAVQHYIIAAGPLDNALSQFAARANVILSFSP 71

Query: 69  SLTRGKRSQGLSGQYDTDVALTQLLSGSGLQALKLSADRYRLESIPDNGGAMELQATTIS 128
             T    + GL G Y  +     LL  +GLQA+  +   Y L++IP   G + L  TT+S
Sbjct: 72  QQTARLNTTGLEGDYSVEQGFALLLQNTGLQAVTQAPGSYVLQAIP--AGQLTLAPTTVS 129

Query: 129 GAYQA---ESPTGPVSGYVATRSLSGTKTDTALIETPQSISIVTKDQMRAQNAESLNQIL 185
              QA   +   G V GY A  S  GTKT T L ETP+S+S+VT  +++ Q +++L ++L
Sbjct: 130 TYQQAGFNQEIAGDV-GYKAQNSRIGTKTSTPLSETPRSVSVVTGQRIKDQKSQTLTEVL 188

Query: 186 RYSAAVI-PETRGATASRLDQLTIRGFSPATY-----LDGLRMPSSRDALPQKDAFDLER 239
            Y   +  P          D   IRGF+   Y      DGLR+  +R      + + LER
Sbjct: 189 GYVPGIFAPPFAAGDGLAGDLFFIRGFNATDYGYGLLRDGLRVQGNRYDTTS-EPYGLER 247

Query: 240 VEVLRGPASVLYGQGTPSGVINMVSKRPLDTPFHEVGVEYGTFNKKRTTFDLSGPMDDQG 299
           VE+ RGP+S+LYG+  P G++N+VSK P  TP  EV + YG+ N+++   D+SGP++D  
Sbjct: 248 VEIFRGPSSLLYGENAPGGLVNLVSKHPTATPQGEVQLGYGSNNRRQLGVDISGPLNDSD 307

Query: 300 VYSYRVAGLFDDADGQVEHTETRRQSLSSAFTWRPDDATSLTLLGHFQKDPKGASYGSVP 359
               RV  L   +D Q +H    R  ++ + T   DD  +LTLL ++QKD      G +P
Sbjct: 308 NILGRVVMLGRKSDTQTDHVPDDRLYIAPSLTLNFDDYNTLTLLANYQKDHTNLELG-LP 366

Query: 360 AWGSVLHSPTGRSIDVDFYDGEKNFEKSDREYYSIGWAFEHHFDDVWTVRQNARYLRSEG 419
           A G++L +P G+ +      G+ ++   +RE +S G+ F H F+D W  RQN+RY++S  
Sbjct: 367 AAGTLLTNPNGK-LSKHTMLGDPDWNTFEREAWSTGYEFSHSFNDDWQFRQNSRYMQSRI 425

Query: 420 QYRSLYSNYL----------MADYRTIRRSTIASDVDLDAYTLDNQVQAKFDTGPLQHTL 469
                + + L          M  Y    +S +        Y+LDNQ++ KF  G L++T+
Sbjct: 426 NRHETWPSTLNNRGFGTQLNMTAYDRYNKSMV--------YSLDNQLEGKFQVGGLENTV 477

Query: 470 LMGLDYQNTSTDTLSGSGVYTAGPTLDIFNPVYGAAVPVPAYTTDGTSRSEQTGVYLQEQ 529
           L G  Y  TS +    +G   AG T++++NPVY      P    +     +  GVY Q Q
Sbjct: 478 LFGASYDRTSFNQDWDAGF--AG-TINVYNPVYLRDPLTPVAVQNTLLEQQMKGVYAQVQ 534

Query: 530 MKWDKWVLLLGGRYDWASTDNSTQTLSSGAKSKSSLDSKAFTGRIGLVYLFDNGLAPYAS 589
            K+D W+ LLGGR DW  +D   +       S +  + + FT + G++Y FDNGL PY S
Sbjct: 535 SKYDHWLFLLGGRQDWVDSDFRDKV---NKASNTRSEDRKFTYQGGVMYQFDNGLTPYVS 591

Query: 590 YAESFNPQSGTGYGGSVFKPTEGKQYEIGIKYQPPGSNSFITAAIFDLRQTNVLTTDPDP 649
           Y+ +F P       GS  KP    QYE+G+KY+P G ++ +T +++DLR+        D 
Sbjct: 592 YSTAFVPVQQISNAGSPLKPITSSQYEVGVKYEPIGWDTAMTLSVYDLRK-------EDD 644

Query: 650 THLCGTGRCQSQDGEVQSRGFELEGKASLNDNLDITAAYAYLDNRISKSNNTVRYAPISD 709
           T+L  T     Q GE +++G E+E  +++  NL++TAAY Y D RI+K + T        
Sbjct: 645 TYLDATTNSYRQVGESRAKGAEVEVNSNITPNLNVTAAYTYTDARITKDSAT-------- 696

Query: 710 IGVGPAIAAEGTTTYGVPRHTASAWADYTVHDGKLKGFGVGAGARYVGSSWGDTANT--- 766
                    EG    GVPR+ AS W  Y   DG+LKG  +G G RY  S++  TA T   
Sbjct: 697 ------SLVEGRQMTGVPRNQASVWGKYRFLDGQLKGLSLGGGVRYFDSTFSYTAPTLYG 750

Query: 767 -LKVPGYTLFDAAVHYDIPNIARLKDNLRLALNATNLANKEYVASCYSYSWCWYGSQRTV 825
            L     TL DAAV Y I        +  + +NA NL +KEYV+ C     C++G  RT+
Sbjct: 751 KLDAGSVTLVDAAVGYQIDK------HWSVDVNAKNLFDKEYVSGCNDAGRCYWGDSRTL 804

Query: 826 QASATYQW 833
             + +Y W
Sbjct: 805 LGTVSYNW 812