Pairwise Alignments

Query, 833 a.a., ligand-gated channel from Pseudomonas simiae WCS417

Subject, 731 a.a., ferrichrome porin FhuA from Serratia liquefaciens MT49

 Score =  469 bits (1206), Expect = e-136
 Identities = 263/733 (35%), Positives = 405/733 (55%), Gaps = 49/733 (6%)

Query: 118 GAMELQATTISGAYQAESPTGPVSGYVATRSLSGTKTDTALIETPQSISIVTKDQMRAQN 177
           G  E   T       AE   G    Y A +S++ TKT T LI+TPQSIS++T+++++ + 
Sbjct: 31  GENESVITVYGEGNTAEEAIGSNGTYAAKQSVTATKTSTPLIKTPQSISVITQEELQTKR 90

Query: 178 AESLNQILRYSAAVIPETRGATASRLDQLTIRGFSPAT---YLDGLRMPSSRDALPQKDA 234
             ++   L Y+  V+    G++ S  D + IRGF+  +   YLDGL++     A  + D 
Sbjct: 91  PATIKNALNYTPGVMTGNSGSS-SIFDSVMIRGFNNVSQNIYLDGLKLQGDMYADSKVDP 149

Query: 235 FDLERVEVLRGPASVLYGQGTPSGVINMVSKRPLDTPFHEVGVEYGTFNKKRTTFDLSGP 294
           + L+RVEVLRGPASVLYG+  P GVI+ VSKRP   P HE+ ++ G  ++ +T FD S  
Sbjct: 150 YFLQRVEVLRGPASVLYGKSNPGGVISSVSKRPQKQPLHELQLQAGNHHEWKTQFDFSDA 209

Query: 295 MDDQGVYSYRVAGLFDDADGQVEHTETRRQSLSSAFTWRPDDATSLTLLGHFQKDPKGAS 354
           +DD+   +YR+ G + +A  Q +    +R +++ +  W+P D TSL      Q +P+   
Sbjct: 210 LDDEEALAYRLTGNYYEAHSQQKGEREKRYAIAPSLLWQPSDKTSLLFQLSLQNEPRTGY 269

Query: 355 YGSVPAWGSVLHSPTGRSIDVDFYDGEKNFEKSDREYYSIGWAFEHHFDDVWTVRQNARY 414
           YG +P+ G++     G+ +   F +GE ++ + +R+  ++G+  +H F+D W+  Q  RY
Sbjct: 270 YGWLPSEGTLTSGEFGK-LSPSFNEGEPSYNRFERQQRTVGYQLDHAFNDTWSFHQAVRY 328

Query: 415 LRSEGQYRSLYSNYLMADY-----------RTIRRSTIASDVDLDAYTLDNQVQAKFDTG 463
             ++  +RS+Y N L                T+ R+T+ SD  L+  T D +++ K + G
Sbjct: 329 QHTKVNWRSIYGNGLCNPMTCMGVAPQQYGTTLSRATMVSDERLNGLTTDTRLEGKLNAG 388

Query: 464 PLQHTLLMGLDYQNTSTDTLSGSGVYTAGPTLDIFNPVYGAAVPVPAYTTDGTSRSEQTG 523
             +HTLLMG+DY     D  +  G  +A P L++ NP YG    +    T   +++ Q G
Sbjct: 389 SWRHTLLMGIDYSQLRNDLQNKMG--SAAP-LNLVNPQYGNHDVLYFGDTHTINKNHQLG 445

Query: 524 VYLQEQMKWDKWVLLLGGRYDWASTDNSTQTLSSGAKSKSSLDSKAFTGRIGLVYLFDNG 583
            YLQ+Q +W  WV  LGGR+D +       +  +G++S SS+    FT R G+ Y+F+NG
Sbjct: 446 TYLQDQAEWQNWVFTLGGRFDHSVVKTHESSNMTGSESSSSITDNEFTWRGGVNYVFNNG 505

Query: 584 LAPYASYAESFNPQSGTGYGGSVFKPTEGKQYEIGIKYQPPGSNSFITAAIFDLRQTNVL 643
           +APY SY+ESF P SG    G  FKP+ GKQYE GIK+ P  +    + A F L + N L
Sbjct: 506 IAPYVSYSESFEPNSGNSLSGQAFKPSRGKQYEAGIKFIPDNAPVSASIAAFQLTKDNNL 565

Query: 644 TTDP-DPTHLCGTGRCQSQDGEVQSRGFELEGKASLNDNLDITAAYAY--LDNRISKSNN 700
             D  +P +         Q+G+++SRG E+EGKA+L  NL++ A+Y Y   + R +  NN
Sbjct: 566 RRDALNPYY-------NVQEGKIRSRGIEIEGKAALTYNLNLIASYTYTHAEFRDNSGNN 618

Query: 701 TVRYAPISDIGVGPAIAAEGTTTYGVPRHTASAWADYTVHDGKLKGFGVGAGARYVGSSW 760
                              G T   VP+H A+ W DYT + G L G  +G GARYV S+ 
Sbjct: 619 -------------------GHTPAMVPKHMANLWTDYTFNQGWLNGLSLGGGARYVSSTP 659

Query: 761 GDTANTLKVPGYTLFDAAVHYDIPNIARLKDNLRLALNATNLANKEYVASCYSYSWCWYG 820
           GD  N  KVP YT+FD A+ Y + +I  L +N  +ALN  NL +K YV+SC++ + C +G
Sbjct: 660 GDDGNNFKVPSYTVFDTAIKYQLDDIPGL-ENAEIALNVNNLFDKHYVSSCFTNNTCSWG 718

Query: 821 SQRTVQASATYQW 833
           ++R +  + T  W
Sbjct: 719 AERQILTTLTLHW 731