Pairwise Alignments

Query, 531 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 638 a.a., putative methyl-accepting chemotaxis protein from Pseudomonas putida KT2440

 Score =  134 bits (338), Expect = 8e-36
 Identities = 87/271 (32%), Positives = 145/271 (53%), Gaps = 6/271 (2%)

Query: 72  GMGELTRDLSYTTSHNALSAAAVAYSVKQLAARLQSQLGAAKQIVSSAEVMIGTEKLTSQ 131
           G+ EL   +    +  A +A  ++   +Q +A + +Q     Q+ ++   M  T    ++
Sbjct: 355 GLRELIGGIGDGVTQIASAAEELSAVTEQTSAGVNNQKVETDQVATAMNQMTATVHEVAR 414

Query: 132 LSRDALGAASQAHQRSTEGREVLTQSITRMHQLSQRANASRELIEALSLRSEEIQRVTLV 191
            +  A  AA  A Q++ EG  V+ +++ ++ +L+     S E +  L   S++I  V  V
Sbjct: 415 NAEQASEAALMADQQAREGDRVVGEAVAQIERLASEVVNSSEAMNLLKTESDKIGSVLDV 474

Query: 192 IQSIASQTNLLALNAAIEAARAGEHGRGFAVVADEVRGLAGRTATATDEVGVMVADIQ-- 249
           I+S+A QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT  +T+E+  ++A +Q  
Sbjct: 475 IKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQQSTEEIEELIAGLQSG 534

Query: 250 -QRTVQVVEQIRQLSTDLQTGVEQVEHAGEQLQNIARLSADVEGQVNEIAQGTDTNRTQL 308
            QR   V++  RQL+    + VE    AG  L+ I R  + ++    +IA   +      
Sbjct: 535 TQRVASVMDNSRQLT---DSSVELTRRAGSSLETITRTVSSIQAMNQQIATAAEEQTAVA 591

Query: 309 DSLFHAVEQMRSDLAVSDQQTRQLADAAVQM 339
           + +  +V  +R     +   + + A ++V++
Sbjct: 592 EEINRSVMNVRDISDQTSAASEETASSSVEL 622



 Score = 49.3 bits (116), Expect = 4e-10
 Identities = 80/373 (21%), Positives = 152/373 (40%), Gaps = 47/373 (12%)

Query: 59  SRAPASAPSEVGDGMGELTRDLSYTTSHNALSAAAVAY--SVKQLAARLQSQLGAAKQIV 116
           S+   ++ +EV D      + L    +  AL+   +A     +Q+   L+  L AA+++ 
Sbjct: 267 SQMMTASQTEVRDAAAAQAKTLLTVATVLALALGLLAAWAITRQIIIPLRQTLRAAERVA 326

Query: 117 SSAEVMIGTEKLTSQLSRDALGAASQAHQRSTEGREVLTQSITRMHQLSQRANASRELIE 176
           S       T+ L  Q  RD LG    +  R T+G   L   I     ++Q A+A+ EL  
Sbjct: 327 SGDL----TQSLQVQ-RRDELGQLQASMHRMTQGLRELIGGIG--DGVTQIASAAEELSA 379

Query: 177 ALSLRSEEIQRVTLVIQSIASQTNLLALNAAIEAARAGEHGRGFAVVADEVRGLAGRTAT 236
                S  +    +    +A+  N +      E AR  E     A++AD+      R   
Sbjct: 380 VTEQTSAGVNNQKVETDQVATAMNQMTATVH-EVARNAEQASEAALMADQQAREGDRV-- 436

Query: 237 ATDEVGVMVADIQQRTVQVVEQIRQLS-----TDLQTGVEQVEHAGEQLQNIARLSADVE 291
               VG  VA I++   +VV     ++     +D    V  V  +  Q  N+  L+A +E
Sbjct: 437 ----VGEAVAQIERLASEVVNSSEAMNLLKTESDKIGSVLDVIKSVAQQTNLLALNAAIE 492

Query: 292 G---------------QVNEIAQGTDTNRTQLDSLFHAVEQMRSDLAVSDQQTRQLADAA 336
                           +V  +AQ T  +  +++ L   ++     +A     +RQL D++
Sbjct: 493 AARAGEAGRGFAVVADEVRSLAQRTQQSTEEIEELIAGLQSGTQRVASVMDNSRQLTDSS 552

Query: 337 VQMEGQA----ETISERLAEVGLDDYHQRIYDLAREGASQIAAQFEADVQQNRISLDDLF 392
           V++  +A    ETI+  ++ +     +Q+I   A E  +        ++ ++ +++ D+ 
Sbjct: 553 VELTRRAGSSLETITRTVSSI--QAMNQQIATAAEEQTA-----VAEEINRSVMNVRDIS 605

Query: 393 DRSYTLIANTSPS 405
           D++      T+ S
Sbjct: 606 DQTSAASEETASS 618