Pairwise Alignments

Query, 621 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 636 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  327 bits (837), Expect = 1e-93
 Identities = 246/648 (37%), Positives = 327/648 (50%), Gaps = 62/648 (9%)

Query: 4   AHSREHVDCVSRV-VRNADRLPQAPVPSLIFDSWRRSMEQHHLD--PGSLQGPRILSEPL 60
           AH   H    +R+ + +   LP   +   I  SWRRS+  H LD   G   G  +     
Sbjct: 9   AHDPLHESREARLKLASEGELPLGMLRDEIDASWRRSLG-HGLDCLQGEQVGLGLEQGHD 67

Query: 61  LRECRERADLFMRIASEEVGQLHHRVRHADYCVMLTDAQGQTIDHRVDTSIRNDCRKAGL 120
           LR   ER  L +   + E+  L  R   A   V+L DAQ   +       +        L
Sbjct: 68  LRLLLERNRLLIDAVTPELDYLVARQGKAGI-VILGDAQANVLAIEGQKHVLQREGLRDL 126

Query: 121 YLGTCWSEAEEGTCGVATVLTSQSAVTVHKRDHFRAAFIGLTCSAAPIFDPQGNLLGVMD 180
           + G+CWSE+  GT  + T +       ++  +H+       +C++ P+ DP+G ++GV+D
Sbjct: 127 HPGSCWSESLRGTNAIGTAVVEGRPTLINCGEHYLDRLSPFSCTSVPLRDPRGEVIGVLD 186

Query: 181 AS---ALKSPDDRRSQHLVRQMVAQSAQAIENAFFMHSARQHWVLQAHSTPGYVDSQPDL 237
            +    +  P D  S  ++      +A  IE+  F        VL  HS P Y++S    
Sbjct: 187 ITREGVMAQPQDSLSTLML------AAGNIESRLFGLCHPDQLVLAFHSRPQYLNSAWHG 240

Query: 238 LLAWDQDGRLHALNSKARQALRRRFGQVPEHI-----------------------GDVFD 274
           LLA   DG + A N  A Q L     QVP H                        G V  
Sbjct: 241 LLALSLDGEVLAANDGACQLL-----QVPRHELIGRRSTDLLGERSPAFIARLWQGGVSS 295

Query: 275 LDALRAVTHDATQQLPWLGEPGVLHVRVNAPRRKPARAAVIPLVDA------RVEEHLRL 328
           +   +   +    QLP  G      V  + P  KPA +   P +DA      R+  +LR+
Sbjct: 296 VQTAKGEFYFRALQLPRHGR-----VTPSTPSSKPALSKQSPALDALAGGDQRLARNLRM 350

Query: 329 ALRVKNRNLPVLVQGETGAGKEVFARQLHERSARHTGPFVAVNCAAIPENLIESELFGYV 388
           A +     LPVL+ GETG GKEV AR LH+ S R   PFVAVNCAAIPE LIESELFGY 
Sbjct: 351 ARQGLGNGLPVLLLGETGTGKEVVARALHQASPRADKPFVAVNCAAIPEGLIESELFGYR 410

Query: 389 AGAFTGASSKGMPGLLVQADGGTLFLDEIGDMPLALQTRLLRVMAEGEVAPLGAAKTRAV 448
            GAFTG+   GM G L+QA GGTLFLDEIGDMPLALQ RLLRV+ E  VAPLGA   + +
Sbjct: 411 EGAFTGSRRGGMVGRLMQAHGGTLFLDEIGDMPLALQARLLRVLQERRVAPLGAGDEQDI 470

Query: 449 DIHVICASHRDLSVLVSEGRFREDLFFRLGCARFCLPPLRERTDKLALINRLLEQ-EARN 507
           D+ +ICA+HRDL  LV E  FREDLF+R+      LP LRER D  A+I  LL++ +AR 
Sbjct: 471 DVALICATHRDLKRLVQEQHFREDLFYRVNGVSLRLPALRERDDLAAIIQGLLDKADAR- 529

Query: 508 SRVSVGIAPSALQLLLGYAWPGNVRQLRHVLAYACAVCEGG-TVQVADLPVEVRGEQV-- 564
               V + P+   LL G+ WPGN+RQL  V+  A A+ E G  V   D   +   +++  
Sbjct: 530 ---GVTLDPALTALLEGFDWPGNIRQLEMVVRTALAMREDGEQVLTLDHLTDCLLDELAS 586

Query: 565 -AAPTEDRASPERQVVLDALIRHRWKPLPTAQALGISRATLYRRVNQL 611
            AAP+      E + +  AL RH+      A ALGISRATLYR++ QL
Sbjct: 587 SAAPSGSLKDSELEQIRGALARHQGNVSAAAAALGISRATLYRKLKQL 634