Pairwise Alignments

Query, 774 a.a., transcription accessory protein from Pseudomonas simiae WCS417

Subject, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

 Score =  849 bits (2193), Expect = 0.0
 Identities = 460/795 (57%), Positives = 561/795 (70%), Gaps = 26/795 (3%)

Query: 1   MDSINSRIAEELGVRPQQVEAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRY 60
           M  I  ++A E+ V   QV+AAV LLD G+TVPFIARYRKE T  LDDTQLR LE RL Y
Sbjct: 1   MQKIIRQLAAEIKVGENQVKAAVELLDGGATVPFIARYRKEATDGLDDTQLRELEARLSY 60

Query: 61  LRELDERRISILASIEEQGKLTPQLERDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAG 120
           LREL++RR+++L +I+EQGKLTP+L   I+ A TK  LED+YLP+KQKRRTKGQIA E G
Sbjct: 61  LRELEDRRVAVLKAIDEQGKLTPELRAAIEFAPTKQELEDIYLPFKQKRRTKGQIAREFG 120

Query: 121 LGDLADGLFNDPSLTPETEAARFIDAEKGVAD---------VKAALEGAKYILMERFAED 171
           +  LAD L  DP+L P  EA  F+     + D         V   L+G + IL ER+AED
Sbjct: 121 IEPLADKLLADPTLDPAVEAKAFLQPATTLDDGKPGPDFSTVPLVLDGVRDILSERWAED 180

Query: 172 ASLLEKLRNYLKQEAILSARVIAGKEEEGA---KFRDYFEHDEPLKSMPSHRALAIFRGR 228
           A+L++ LR +L  E +L + +++GK+E  A   KFRDYFE+DEP+  +PSHRALA+FRGR
Sbjct: 181 AALVQSLRVWLWNEGLLKSSLMSGKDENNADVAKFRDYFEYDEPIGRVPSHRALAVFRGR 240

Query: 229 NEGILSSALKVGDEL-PGTMHPCEGMIGQQFGIQNQNRPADKWLGEVVRWTWKVKLYTHL 287
              IL + L +  E  PG     EG I    G  +  RPAD  L + V WTW+VKL    
Sbjct: 241 ALDILDAKLVLPVEPEPGKPSVAEGRIALHLGWSHAGRPADDLLRKCVAWTWRVKLALST 300

Query: 288 ETDLLGELRDGAETEAINVFAHNLHDLLLAAPAGPRATLGLDPGLRTGCKVAVVDSTGKL 347
           E DL   LR+ AE  AI VFA NL DLLLAAPAGPR  +GLDPG+RTG KVAVVDSTGKL
Sbjct: 301 ERDLFTRLREDAEKVAIKVFADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAVVDSTGKL 360

Query: 348 LDHATVYPHVPHNKWDQTLAILAALCAKHAVDLIAIGNGTASRETDKLAAELIKKY---- 403
           ++ ATV+PH P   W+ +L  L  LCAKH V+LIAIGNGTASRETDKLAA+LIK      
Sbjct: 361 VETATVFPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLLAKMA 420

Query: 404 -----PAMKMTKVMVSEAGASVYSASELASKEFPDLDVSIRGAVSIARRLQDPLAELVKI 458
                P +++ KV+VSEAGASVYSASE AS+E PD+DVS+RGA SIARRLQDPLAELVKI
Sbjct: 421 AQAGAPEIQVDKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVKI 480

Query: 459 DPKSIGVGQYQHDVSQLKLARGLDAVVEDCVNAVGVDVNTASVALLARISGLNATLAQNI 518
           DPKSIGVGQYQHDV+Q +LAR L AVVEDCVN+VGVD+NTASV LL+R+SGL+A++A+ +
Sbjct: 481 DPKSIGVGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLSASVAKAV 540

Query: 519 VNHRDENGAFKTRAALKKVARLGEKTFEQAAGFLRVMNGDNPLDSSAVHPEAYPLVQRIA 578
           V  R+ NGAF TR  L  V   G K FEQ+AGFLR+  G +PLD + VHPE YPLV++I 
Sbjct: 541 VRWRESNGAFATRKQLLDVTGFGPKAFEQSAGFLRIRGGTDPLDVTGVHPETYPLVEQII 600

Query: 579 AETDRDIRSLIGDAAFLKRLDPKKYTDETFGVPTITDILQELEKPGRDPRPEFKTAEFQD 638
            +T + I  L+G A  LK L P+ + +E FGV T+ DIL ELEKPGRDPRP+FK A F D
Sbjct: 601 VKTGKPIAELMGRAEMLKTLKPELFANEKFGVITVKDILGELEKPGRDPRPDFKVARFND 660

Query: 639 GVEDLKDLELGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDV 698
           GV+D+ DL+ GMILEG V+NV  FGAFVD+GVHQDGLVH+S LS KF+ D RE VK GD+
Sbjct: 661 GVDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDI 720

Query: 699 VKVKVMEVDIPRKRVGLSMRMSDTPGEKIDGARGARPGSAPRQSQNNAPRKETATAAPSN 758
           VKVKVMEVD+ RKR+GLSM++   P  + DG R  R   A R  Q    R  +   A   
Sbjct: 721 VKVKVMEVDVARKRIGLSMKLDAAPARR-DGPRDNRFEGAGRGQQQQGRRDNSPQPA--- 776

Query: 759 NAMASLFANAKQLKK 773
             MAS FA  + L+K
Sbjct: 777 GQMASAFAKLQGLRK 791