Pairwise Alignments

Query, 774 a.a., transcription accessory protein from Pseudomonas simiae WCS417

Subject, 778 a.a., RNA-binding transcriptional accessory protein from Dickeya dianthicola ME23

 Score =  952 bits (2461), Expect = 0.0
 Identities = 496/782 (63%), Positives = 608/782 (77%), Gaps = 15/782 (1%)

Query: 2   DSINSRIAEELGVRPQQVEAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRYL 61
           ++++  IA EL  R +QV AA+ LLDEG+TVPFIARYRKEVTG LDDTQLR LE RL YL
Sbjct: 3   NALSQIIASELQARTEQVTAAIQLLDEGNTVPFIARYRKEVTGGLDDTQLRQLESRLSYL 62

Query: 62  RELDERRISILASIEEQGKLTPQLERDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGL 121
           REL+ERR +IL SIEEQGKLT  L   I    +KT LEDLYLPYK KRRT+GQIA+EAGL
Sbjct: 63  RELEERRQTILKSIEEQGKLTDALATSINTTLSKTELEDLYLPYKPKRRTRGQIAIEAGL 122

Query: 122 GDLADGLFNDPSLTPETEAARFIDAEKGVADVKAALEGAKYILMERFAEDASLLEKLRNY 181
             LAD L+NDPS TPE  A  +++A+ GVADVKAAL+GA+YILMERFAEDA+LL K+R+Y
Sbjct: 123 EPLADSLWNDPSQTPELVANAYVNADNGVADVKAALDGARYILMERFAEDAALLAKVRDY 182

Query: 182 LKQEAILSARVIAGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGILSSALKVG- 240
           L + A L +RV+ GKEE+GAKFRDYF+H EPL  +PSHRALA+FRGRNEG+L  +L    
Sbjct: 183 LWKNAHLVSRVVEGKEEDGAKFRDYFDHREPLSQVPSHRALAMFRGRNEGMLQLSLNADP 242

Query: 241 --DELPGTMHPCEGMIGQQFGIQNQNRPADKWLGEVVRWTWKVKLYTHLETDLLGELRDG 298
             DE P   H CE +I     ++  N PAD W   VV WTW++K+  HLET+L+G +R+ 
Sbjct: 243 QFDEPPKESH-CEQIIVDHLRLRLGNAPADGWRRAVVNWTWRIKVLLHLETELMGSVREK 301

Query: 299 AETEAINVFAHNLHDLLLAAPAGPRATLGLDPGLRTGCKVAVVDSTGKLLDHATVYPHVP 358
           AE EAINVFA NLHDLL+AAPAG RAT+GLDPGLRTG KVAVVD+TGKL+   T+YPH  
Sbjct: 302 AEDEAINVFARNLHDLLMAAPAGMRATMGLDPGLRTGVKVAVVDATGKLVATDTIYPHT- 360

Query: 359 HNKWDQTLAILAALCAKHAVDLIAIGNGTASRETDKLAAELIKKYPAMKMTKVMVSEAGA 418
             +  +   ++AALC KH V+L+AIGNGTASRET++   +  K++P +K  KV+VSEAGA
Sbjct: 361 -GQAAKAATVVAALCIKHQVELVAIGNGTASRETERFFLDTQKQFPDVKAQKVIVSEAGA 419

Query: 419 SVYSASELASKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLA 478
           SVYSASELA+ EFP LDVS+RGAVSIARRLQDPL+ELVKIDPKSIGVGQYQHDVSQ +LA
Sbjct: 420 SVYSASELAALEFPGLDVSLRGAVSIARRLQDPLSELVKIDPKSIGVGQYQHDVSQTQLA 479

Query: 479 RGLDAVVEDCVNAVGVDVNTASVALLARISGLNATLAQNIVNHRDENGAFKTRAALKKVA 538
           + LDA+VEDCVNAVGVD+NTASV LL R++GL   +AQNIV+ RDENG F  R  L KV+
Sbjct: 480 KKLDAIVEDCVNAVGVDLNTASVPLLTRVAGLTRLMAQNIVSWRDENGRFNNRDQLLKVS 539

Query: 539 RLGEKTFEQAAGFLRVMNGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIGDAAFLKRL 598
           RLG K FEQ AGFLR+ +GDNPLD+S VHPE YP+V+RI A T++ ++ L+G+++ L+ L
Sbjct: 540 RLGPKAFEQCAGFLRINHGDNPLDASTVHPETYPVVERILAATEQKLQDLMGNSSALRTL 599

Query: 599 DPKKYTDETFGVPTITDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLELGMILEGVVTN 658
            P  +TD+ FGVPT+TDI++ELEKPGRDPRPEFKTA F DGVE L DL  GMILEG VTN
Sbjct: 600 KPASFTDDRFGVPTVTDIIKELEKPGRDPRPEFKTASFADGVETLNDLLPGMILEGAVTN 659

Query: 659 VTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMR 718
           VTNFGAFVDIGVHQDGLVHIS+L+++F++DP + VKAGD+VKVKV+EVD+ RKR+ L+MR
Sbjct: 660 VTNFGAFVDIGVHQDGLVHISSLADRFVEDPHQVVKAGDIVKVKVLEVDLQRKRIALTMR 719

Query: 719 MSDTPGE---KIDGAR---GARPGSAPRQSQNNAPRKETATAAPSNNAMASLFANAKQLK 772
           + + PGE   + DG R        S P Q+ N A  ++++T A  N+AM+   A A   K
Sbjct: 720 LDEQPGEGNSRRDGGRERDNGNKASRPPQAGNKARPRQSSTPA-GNSAMSDALAAA--FK 776

Query: 773 KR 774
           KR
Sbjct: 777 KR 778