Pairwise Alignments

Query, 387 a.a., urea ABC transporter permease from Pseudomonas simiae WCS417

Subject, 402 a.a., Branched-chain amino acid ABC transporter, permease protein LivM (TC 3.A.1.4.1) from Variovorax sp. SCN45

 Score =  108 bits (270), Expect = 3e-28
 Identities = 104/372 (27%), Positives = 161/372 (43%), Gaps = 76/372 (20%)

Query: 44  LTYAFVAVGLVLCWGYGGILSLGQGVFFGVGGYCMAMFLKLEASDPESTKIQSTPGIPDF 103
           L Y  +A+GL +  GY G+L LG   FF VG Y  A+                       
Sbjct: 39  LLYVLLALGLNIVVGYAGLLDLGYVAFFAVGAYLFAL----------------------- 75

Query: 104 MDWNQITE-LPWLWQPFHSFSFT-LAAVIAVPVLLAFIIGMAL----FKRRVGDVYFSIV 157
           M  + +TE  PW  Q F +   T L  VI + +++A  +G+ L     K R GD Y +IV
Sbjct: 76  MGSSHLTETFPWFAQMFPNGMHTSLLIVIPLALVVAGCLGVLLGAPTLKLR-GD-YLAIV 133

Query: 158 TQAIALILTVLIVGQQ---GLTGGVNGITDLKTLLGWDLR----------TDSAKMILYF 204
           T     I+ V +        +T G  GIT + ++  W L           T S+  + Y+
Sbjct: 134 TLGFGEIIRVFLNNLDQPVNITNGPKGITAIDSIKFWGLDLGKAWKFDGFTISSVSLYYY 193

Query: 205 INAGLLFGCIFIGRFILASKLGRLLMAMRDKEERVRFSGYDVASFKIFVFCVAAAFSAIG 264
           +   L+   + I   +  S++GR  MA+R+ E   +  G +  + K+  F + A+F  + 
Sbjct: 194 LFLALVVATVIISHRLQTSRIGRAWMAIREDEIAAKAMGINTRNMKLLAFGMGASFGGVS 253

Query: 265 GAMFALQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLGAVYGALLVNYGKTYFSESFPEL 324
           GAMFA   GF+SP    ++ S+ +V    +GG   L G + GA+L+         + PE+
Sbjct: 254 GAMFAAFQGFVSPESFSLMESVMIVAMVVLGGIGHLPGVILGAVLL--------AALPEV 305

Query: 325 WLYLMG----------------GLFIAVVMYFPNGL--AGLWDS--HGRQALAKMLRRKP 364
             Y+ G                 LFIA+ M     L   GLW S  HG+     + R+  
Sbjct: 306 LRYVAGPLQAATDGRLDASILRQLFIALAMIVIMLLRPRGLWPSPEHGK----TLARKGG 361

Query: 365 VAATPVNAPLTP 376
           V   P +A + P
Sbjct: 362 VPVDPAHAAVAP 373