Pairwise Alignments

Query, 387 a.a., urea ABC transporter permease from Pseudomonas simiae WCS417

Subject, 355 a.a., ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  105 bits (262), Expect = 2e-27
 Identities = 90/364 (24%), Positives = 159/364 (43%), Gaps = 68/364 (18%)

Query: 19  LLALLILVVF------PLTLDAFR-LNMVGKYLTYAFVAVGLVLCWGYGGILSLGQGVFF 71
           LLALL++V+F      P      + L++  K L +  +     L  GY GI+S    +FF
Sbjct: 16  LLALLLVVLFLALAFAPFIFPGVKALSVAAKILVFVVLVASFDLLLGYTGIVSFAHTMFF 75

Query: 72  GVGGYCMAMFLKLEASDPESTKIQSTPGIPDFMDWNQITELPWLWQPFHSFSFTLAAVIA 131
           G+G Y +A+          ++++          +W  +                L A +A
Sbjct: 76  GIGAYGIAI---------SASRLGP--------NWGAVL-------------VGLGASLA 105

Query: 132 VPVLLAFIIGMALFKRRVGDVYFSIVTQAIALILTVLIVGQQGLTGGVNGIT-DLKTLLG 190
           + ++L+F IG  LF  RV  ++F+++T A+A     L       TGG +G+T  L  L+ 
Sbjct: 106 ISLVLSFAIG--LFSLRVRAIFFAMITLAVASAFQTLASQLSDFTGGEDGLTFKLPELIS 163

Query: 191 WDLRTDSAKMILYFINAGLL-FGCIFIGRFILA--------SKLGRLLMAMRDKEERVRF 241
                     +   ++  LL +  +F+   +L         S  GR+L A+R+ E R   
Sbjct: 164 PSFEFSEEPFLGVSLDGRLLCYYLLFVAAVVLVLALLRIVNSPFGRVLQAIRENEFRAEA 223

Query: 242 SGYDVASFKIFVFCVAAAFSAIGGAMFALQVGFMSP-SFVGIVPSIEMVIFAAVGGRMSL 300
            GY V  ++     ++A F+ + GAM A+ + +  P + +     I++++   +GG  ++
Sbjct: 224 IGYRVVVYRTTAAVLSALFATLAGAMLAIWLRYNGPDTSLSFEIMIDVLLIVVIGGMGTI 283

Query: 301 LGAVYGALLVNYGKTYFSESF------------------PELWLYLMGGLFIAVVMYFPN 342
            GA  GA+L    ++Y  +                    P+ WL  +G LF+  V YFP 
Sbjct: 284 YGAAIGAVLFVIAQSYLQDLLRIGNEAASGLPWLAALLSPDRWLLWLGVLFVLSVYYFPT 343

Query: 343 GLAG 346
           G+ G
Sbjct: 344 GIVG 347