Pairwise Alignments

Query, 387 a.a., urea ABC transporter permease from Pseudomonas simiae WCS417

Subject, 327 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Variovorax sp. SCN45

 Score =  101 bits (252), Expect = 3e-26
 Identities = 86/347 (24%), Positives = 156/347 (44%), Gaps = 43/347 (12%)

Query: 18  VLLAL-LILVVFPLTLDAFRLNMVGKYLTYAFVAVGLVLCWGYGGILSLGQGVFFGVGGY 76
           VLL + ++L V P T   + L +V   + ++ +A+G+ L  G  G  +L    FFG+G Y
Sbjct: 15  VLLGMAVVLAVLPFTTSGYVLYVVNLLMVFSVLALGMHLVIGETGQFALSHAAFFGIGIY 74

Query: 77  CMAMFLKLEASDPESTKIQSTPGIPDFMDWNQITELPWLWQPFHSFSFTLAAVIAVPVLL 136
                               T G+ +    NQ       WQP   F  ++ A   +   L
Sbjct: 75  --------------------TAGLIN----NQ-------WQP--PFFVSILAGALLSAAL 101

Query: 137 AFIIGMALFKRRVGDVYFSIVTQAIALILTVLIVGQQGLTGGVNGITDLKTLLG-WDLRT 195
            ++IG+   + R  D+Y ++ T A    +  + +  + +T G NG+      LG + L  
Sbjct: 102 GWVIGLLALRMR--DIYLALATFAFGEAMQWVFLNWESVTNGSNGLQMKPASLGGYQLMN 159

Query: 196 D-SAKMILYFINAGLLFGCIFIGRFILASKLGRLLMAMRDKEERVRFSGYDVASFKIFVF 254
           D  A   +  I A +L+  + + R    S+LG    A+R+ +      G +  + K+  F
Sbjct: 160 DLQAYPFVIAIAALMLWLTVTLSR----SRLGSSFRAVRESDVAAVAMGVNTRTVKVTAF 215

Query: 255 CVAAAFSAIGGAMFALQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLGAVYGALLVNYGK 314
            ++AAF+ + G M+ L   F+ P  +G   +I ++    VGG  S+ GAV GA++     
Sbjct: 216 VLSAAFAGVAGGMYTLFTSFIHPESLGFQTTILILTMVVVGGLGSVRGAVAGAIVFGLAS 275

Query: 315 TYFSESFPELWLYLMGGLFIAVVMYFPNGLAGLWDSHGRQALAKMLR 361
               ++ P     + GG+ +  +M+ P G+A L+ +  +   A  ++
Sbjct: 276 ELLRQA-PSYQEIIYGGILMLFMMFLPKGMASLFAARRKSQRAASVK 321