Pairwise Alignments

Query, 387 a.a., urea ABC transporter permease from Pseudomonas simiae WCS417

Subject, 346 a.a., ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score = 92.0 bits (227), Expect = 2e-23
 Identities = 88/342 (25%), Positives = 141/342 (41%), Gaps = 54/342 (15%)

Query: 22  LLILVVFPLTLDAFRLNMVGKYLTYAFVAVGLVLCWGYGGILSLGQGVFFGVGGYCMAMF 81
           +L L   PL    + L M      +   A+GL L  G  G++SL  G F GVG Y +A  
Sbjct: 30  VLSLFTLPLWGSDYVLAMACIVGIHVIAALGLNLTTGNAGLISLSHGAFIGVGCYTVA-- 87

Query: 82  LKLEASDPESTKIQSTPGIPDFMDWNQITELPWLWQPFHSFSFTLAAVIAVPVLLAFIIG 141
                                           WL +    F   L     V   L  I+G
Sbjct: 88  --------------------------------WLGKQGVPFYIALPVAGFVAAFLGVIVG 115

Query: 142 MALFKRRVGDVYFSIVTQAIALILTVLIVGQQGLTGGVNGITDLKT-LLGWDLRTDSAKM 200
           +     RV  +Y +I T A   IL+        +TGGV+G +  +  L G++L  D    
Sbjct: 116 LPSL--RVKGLYLAIATLAAHFILSFAFREWDAVTGGVSGTSIPRANLFGFELVGDRRNF 173

Query: 201 ILYFINAGLLFGCIFIGRFILASKLGRLLMAMRDKEERVRFSGYDVASFKIFVFCVAAAF 260
            L F+ A   F      R +  + +GR  +A+RD++      G  +   K+  F + A +
Sbjct: 174 YLIFVCA---FAMAVAARNLARTHIGRAFVAVRDRDISAEILGVHLLRTKLTAFAIGAFY 230

Query: 261 SAIGGAMFALQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLGAVYGALLVNYG------- 313
           + + G +     G ++P +  +  S+  +    VGG  ++LG+V GA+ + +        
Sbjct: 231 AGVAGGLLGYFYGSITPDYFVLTLSVFYLAAVIVGGLGTVLGSVLGAVFMTFVPEGLRLL 290

Query: 314 KTYFSESFPEL--WLYLMG----GLFIAVVMYF-PNGLAGLW 348
            +  S++FP +   L  MG    GL I V + F P+GLA +W
Sbjct: 291 ASVSSQAFPGVAGLLLPMGQVVFGLLIIVFLIFEPHGLAAIW 332