Pairwise Alignments

Query, 387 a.a., urea ABC transporter permease from Pseudomonas simiae WCS417

Subject, 330 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  101 bits (251), Expect = 3e-26
 Identities = 87/350 (24%), Positives = 149/350 (42%), Gaps = 49/350 (14%)

Query: 14  LIGIVLLALLILVVFPLTLDAFRLNMVGKYLTYAFVAVGLVLCWGYGGILSLGQGVFFGV 73
           L  +VL A  +L   P  +  + + ++  +L +    +GL L  GY G  SLG   FFG+
Sbjct: 6   LAALVLCAAALLAA-PHFMKNYGIYLLSYWLVFIIATMGLNLTVGYAGQKSLGHAAFFGI 64

Query: 74  GGYCMAMFLKLEASDPESTKIQSTPGIPDFMDWNQITELPWLWQPFHSFSFTLAAVIAVP 133
           G Y +A+ +K   S                          WL  P               
Sbjct: 65  GAYTVAIMMKAGLSF-------------------------WLGLP-------------TA 86

Query: 134 VLLAFIIGMALF--KRRVGDVYFSIVTQAIALILTVLIVGQQGLTGGVNGITDLKT--LL 189
           +L+ F++G+ L     RV  +Y +  T      + +++  ++ LTGG  GI ++    L 
Sbjct: 87  MLICFVVGIILGFPALRVQTIYLAFATLGFNTAVWLVMRNEEWLTGGTFGINNIARPGLF 146

Query: 190 GWDLRTDSAKMILYFINAGLLFGCIFIGRFILASKLGRLLMAMRDKEERVRFSGYDVASF 249
           G  L  + A          LL   ++   ++L S  G+   A+RD   R    G D  S+
Sbjct: 147 GLSLEGNLAYYHFVLAVTVLLAALLW---WLLRSPWGKAFTALRDNPIRAESLGVDTRSY 203

Query: 250 KIFVFCVAAAFSAIGGAMFALQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLGAVYGALL 309
            +  F + A ++ + GA+FA  V F+ P+   +  SI M +   VGG    LG V GA +
Sbjct: 204 TLLAFAIGAVYAGVAGALFASLVQFIEPAPFTVGASIMMYLMVVVGGPGYFLGPVLGAAV 263

Query: 310 VNYGKTYFSESFPELW-LYLMGGLFIAVVMYFPNGLAGLWDSHGRQALAK 358
                 +    F + W L++ GG  + ++++ P+GL  + +    + LA+
Sbjct: 264 GVILPEWL--RFAQAWYLFVFGGAVVLLMIWLPDGLLSIPERIRARRLAR 311