Pairwise Alignments

Query, 412 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 388 a.a., Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 77.4 bits (189), Expect = 7e-19
 Identities = 80/319 (25%), Positives = 138/319 (43%), Gaps = 21/319 (6%)

Query: 19  TPLLALSLLAAALFSQGVLADNEGLAVTPTEVTVGQLHSATGTMAISETGSIQAERLAIE 78
           T L A ++LA A  +   LA  +G  V+  E+ +G +   +G +A           L ++
Sbjct: 3   TTLTAAAVLALA--AGPALAQTQG--VSKDEIVIGSIQDLSGPIAGFGKQVRMGMLLRVD 58

Query: 79  QINASGGILGRQIKVIQEDGASDWPTFAEKAKKLLVNDKVAAVFGCWTSASRKAVLPIFE 138
           +IN  GGI GR+IK++ ED   D       A+KL+  DK+ A+ G   +A   A +P+  
Sbjct: 59  EINEQGGINGRKIKLLVEDSKYDPRNAVLAAQKLVNQDKIFAMVGHIGTAQNMAAMPVQF 118

Query: 139 KENGLLYYP-----TFYEGLEQSKNVIYTGQEATQQILASLDWIAKTKGAKTFYLVGSDY 193
           ++N L +YP       Y+   + K           +I+  +  +AK KGAK    +  D 
Sbjct: 119 QKNVLNFYPITAARQMYDPFHKLKYSFAATYYDQMRIVVPM--LAKEKGAKKVCAMYQDD 176

Query: 194 IWPRTSMKIARKHIENVLHGTVVGEDYYPLGNTQFGSLINKVKLKKPDVVFAAVVGGSNV 253
            +     + A   ++     T+  E  Y  G T F S + K++  + D+V    +    +
Sbjct: 177 EFGLEVKRGAEDGLKTA-GMTLAAETTYKRGATDFASQMQKLQADQCDLVVMGTIIRETI 235

Query: 254 AFYKQLNAAGVNSAKQTLLTLSVTEDELL-GIGGENMAGFYASM----KYFQSLDNPNNK 308
                    G N    T +  S    +L+  +GG  M GFYA+M     Y  S   P  +
Sbjct: 236 GGIATAKRLGFN---PTFVGSSAAYTDLIHKLGGPAMNGFYAAMTVQHPYLDSASQP-LR 291

Query: 309 AFVEAFKAKYGKDAVIGDV 327
            +   ++ K+ ++  +  V
Sbjct: 292 FWANKYQTKFNEEPTVFSV 310