Pairwise Alignments

Query, 281 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 306 a.a., spermidine/putrescine ABC transporter - inner membrane subunit from Pseudomonas putida KT2440

 Score =  145 bits (367), Expect = 8e-40
 Identities = 87/289 (30%), Positives = 157/289 (54%), Gaps = 18/289 (6%)

Query: 3   RGYLLSLPALVLFAGLLILPLGLTLVLSFNVFDYQVGVKADEWTF-----------AHYL 51
           R  ++ +P + LF    +LP  + L +SF   D  +    + +T+           A+Y 
Sbjct: 18  RHLVIGVPFIWLFL-FFMLPFFIVLKISFAEADVAIPPYTEIYTYVEDKIQLVLNLANYG 76

Query: 52  SLLSDSYFYEIFWRTFWISALVTLLCVLIGVPEAYILSRMGTPWRSIFLILILTPLLISV 111
            L  D  +   +  +  ++   TLLC+LIG P AY ++      +++ L+LI+ P   ++
Sbjct: 77  LLTEDELYLSAYLGSLKMAFFSTLLCLLIGFPMAYAIANAKKETQTVLLLLIMMPTWTAI 136

Query: 112 VVRAFGWSLLLGADGLVNQVIQFLG--GRPVKLLYTPFAVIIALVHVMLPFMIIPVWTSL 169
           ++R + W  +L  +GL+N  + + G   +P+++L T  AV I +V+  LPFMI+P++ +L
Sbjct: 137 LIRVYAWMGILSNNGLLNGFLLWTGLIDQPLQILNTNLAVYIGVVYSYLPFMILPLFANL 196

Query: 170 QKLDPSAEQAALSLGASQATVMRKIVLPQVMPGVLSGTLIVFGLAASSFAIPGLLGGRRL 229
            K DPS  +AA  LG+S      KI +P    G+++G ++VF      F IP LLGG   
Sbjct: 197 VKHDPSLLEAASDLGSSTFNSFWKITVPLSKNGIIAGCMLVFIPVVGEFVIPELLGGPET 256

Query: 230 KMVATVVYDQYLSELNWPMGATIAVVLLLVNLLIMLSWNRM----VEGR 274
            M+  V++ ++ +  +WP+ + +AVV+L + ++ +L +NR     +EGR
Sbjct: 257 LMIGKVLWQEFFNNRDWPVASALAVVMLAILIVPILLFNRSQAKEMEGR 305