Pairwise Alignments

Query, 764 a.a., general secretion pathway protein GspD from Pseudomonas simiae WCS417

Subject, 776 a.a., type II secretion system secretin GspD from Rhodanobacter sp000427505 FW510-R12

 Score =  219 bits (559), Expect = 3e-61
 Identities = 200/758 (26%), Positives = 330/758 (43%), Gaps = 79/758 (10%)

Query: 4   SVPPFRMVAPLLVLALSACSNPSTAPLLVDSELGQPLADTRRSGETVLDRQSEPAPKPPV 63
           S+PP      L   A++   NP  APL +++E G                +   A    V
Sbjct: 26  SLPPPHDDGALQREAMAGTQNPVPAPLPLNNEGGS---------------RGASAATAEV 70

Query: 64  QHRVTNSARGHAPAVVKARNPL--GDQPVQLNFVDADIQAVVRA-LSRATGQQFLVDPRV 120
            H    S R   P  +    P+  G+  V  NF +  +QAVV+A L     Q + + P V
Sbjct: 71  SH---GSGRFIRPGALATPRPVASGNGAVTFNFENQPVQAVVKAILGDLLKQNYTIVPGV 127

Query: 121 KGNLTLVSEGQVPAHQAYDMLLAALRMQGFSVVDVGGVAQVVPEADAKLLGGPIYTAGSS 180
           +GN++  +   V A QA  +L   L   G ++V   G   V+P+ DA + G  + + G+S
Sbjct: 128 QGNISFATSEPVDASQALPILETLLSWTGNALVRRDGGYVVMPQKDA-VAGNLVPSLGAS 186

Query: 181 ----GMQTRTFRLQYENAVNLIPVLRPIVSPNNPINAYPGNNSIVITDYAENLARVAQII 236
               G+Q R F L Y +A  +  +++P   P+  +   P  N +V++   + LA    ++
Sbjct: 187 APAGGLQARLFPLHYISATEMQKLIKPFARPDATLLVDPARNLLVMSGTPQELANYQSMV 246

Query: 237 NGIDTP--SAIDTDVVRVQNGIAVDIAAMVSELLETQG-ADQTQKINVIGDPRSNSIIIR 293
              D      +   V  +Q     ++   +  +    G       +  I   R+N++++ 
Sbjct: 247 RTFDVDWLRGMSVGVFNLQYANVGELMPKLDAMFGEHGNTPLAGMLRFIPIERTNALVVI 306

Query: 294 SGSPERTELARNLIYKLDNAQSNPSNMHVVYLRNAQAGKLAQSLRGLLTGESDSGVSDDA 353
           S   +  +   + I ++D    N   + V  +RN +A  LA+ L  +    + SG  +  
Sbjct: 307 STQSDYLQEVGDWIARIDRGGGNEPQLFVYDVRNIKASDLAKYLAQIYANGAGSGGDNGG 366

Query: 354 R---GKLSAMGGNGKNTEGTS-----------------NAQNSSGTPTGSGVQSGYGQST 393
           +   G      G+ +N   TS                   Q +SG  +G    +G G+ +
Sbjct: 367 QVGPGLTGVTLGSAENAGATSMGSTAGGFGNPVDASRGGGQVNSGMGSGGFGATGGGRDS 426

Query: 394 GSTTGTSGTSQ----------------DQDTSFSAGGVTIQADATTNTLLISAPDPLYRN 437
           G+  G  G+S                 +   S S G V I +   +N LL+ A    +  
Sbjct: 427 GAAAGRFGSSSAGFGGNPVGGGNGAASEAQYSSSDGSVRISSVDGSNQLLVRARPSQWEE 486

Query: 438 LREVIDMLDQRRAQVVIESLIVEVGEDDATEFGVQWQAGNLGGKGGFGGVNLGGSGVNST 497
           ++  I  LD    QV IE+ I+EV      +FGVQW    L G  G  G    G+ V   
Sbjct: 487 IKTAISKLDNVPLQVQIETRILEVNLTGEFQFGVQWY---LEGLTGSTGSTSNGTFVPGQ 543

Query: 498 PTSKTSIDVLPKGLNVGLVDGTVDIPGIGKVL--DLKVLARALKSKGGTNVLSTPNLLTL 555
           P     + +   G   G        P     L  DL+V  RA+++ G T  LS P+++ +
Sbjct: 544 PYRHRQLGLGQGGNAFG------GEPFFYSFLNSDLQVAVRAMETSGNTKTLSAPSMVVM 597

Query: 556 DNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDI 615
           +N+ ASI VG  IP    S  TG G T++  +  V     G+ LNV+P+I+ GG V ++I
Sbjct: 598 NNQVASIAVGNQIPINQTSVNTGIGTTTS--YSQVNYLSTGVILNVQPRINPGGLVYMNI 655

Query: 616 YQEVSTVDERASVTAGT-VTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSDI 674
            QEVS  D+   +  G    ++R + T + +  GQ ++LGGL+Q     ++  +P L+ +
Sbjct: 656 SQEVSQADKSVPLVNGNPAISQRKLATQVAVQSGQTVLLGGLIQQAEGNTDTGIPGLNRV 715

Query: 675 PGLGALFRNEKRSVSKTNLMVFLRPYIIRDSGAGRSIT 712
           P LG LF +  RS ++T L+V + P +IR     + IT
Sbjct: 716 PVLGRLFGSTNRSRNRTELIVLITPRVIRGGADAKQIT 753