Pairwise Alignments

Query, 764 a.a., general secretion pathway protein GspD from Pseudomonas simiae WCS417

Subject, 412 a.a., type 4 pili biogenesis protein from Pseudomonas putida KT2440

 Score =  103 bits (258), Expect = 1e-26
 Identities = 78/289 (26%), Positives = 127/289 (43%), Gaps = 28/289 (9%)

Query: 416 TIQADATTNTLLISAPDPLYRNLREVIDMLDQRRAQVVIESLIVEVGEDDATEFGVQWQA 475
           ++  D  TNTL++  P      +R+++  LD    QV IE+ IVE   D     GV+W  
Sbjct: 145 SLSVDERTNTLVVHLPADRLAEMRQLVAQLDVPVRQVAIEARIVEANVDYEKSLGVRWGG 204

Query: 476 GNLGGKGGFGGVNLGGSGVNSTPTSKTSIDVLPKGLNVGLVDGTVDIPGIGKVLDLKVLA 535
              G K   G       G+    +S          + +GL+ G V       +LDL++  
Sbjct: 205 PLYGEKLRPGKELFVDLGLERAGSS----------IGLGLLRGDV-------LLDLEL-- 245

Query: 536 RALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEV 595
            A++  G   ++S P ++T D E A I  G  +P+           TS +   +V   E 
Sbjct: 246 SAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQE---------TSQSGATSVSFREA 296

Query: 596 GLKLNVRPQISEGGTVKLDIYQEVSTVDERASVTAGTVTNKRAIDTSILLDDGQIMVLGG 655
            L L V PQI+    V + +       D   ++       K  ++  + + DG+ +V+GG
Sbjct: 297 SLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEVNAKVRVADGETIVIGG 356

Query: 656 LLQDGYSQSNDAVPWLSDIPGLGALFRNEKRSVSKTNLMVFLRPYIIRD 704
           +     +   D VP+  D+P +G LFR +     K+ L+VFL P I+ D
Sbjct: 357 VYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRIMSD 405



 Score = 48.1 bits (113), Expect = 9e-10
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 13/168 (7%)

Query: 84  PLGDQPVQLNFVDADIQAVVRALSRATGQQFLVDPRVKGNLTLVSEGQVPAHQAYDMLLA 143
           P   +P+ LNF D +++AV++ L+   G   +    V+G++TL  +  VP  QA D++  
Sbjct: 14  PYQGEPLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQGSVTLRLQ-DVPWDQALDLV-- 70

Query: 144 ALRMQGFSVVDVGGVAQVVPEAD-----AKLLGGPIYTAGSSGMQTRTFRLQYENAVNLI 198
            LR +G S    G V  V P A+     A         A    ++     + +  A +L 
Sbjct: 71  -LRSKGLSRRQEGNVLLVAPAAEFAAQSADARVSQALDAHLQPLRRELLPIHHAKAADLA 129

Query: 199 PVLRPIVS----PNNPINAYPGNNSIVITDYAENLARVAQIINGIDTP 242
            +L   +     P   ++     N++V+   A+ LA + Q++  +D P
Sbjct: 130 QLLLAGLEGDGIPPASLSVDERTNTLVVHLPADRLAEMRQLVAQLDVP 177