Pairwise Alignments

Query, 764 a.a., general secretion pathway protein GspD from Pseudomonas simiae WCS417

Subject, 621 a.a., putative Secretion protein from Pseudomonas putida KT2440

 Score =  106 bits (264), Expect = 4e-27
 Identities = 90/349 (25%), Positives = 155/349 (44%), Gaps = 35/349 (10%)

Query: 420 DATTNTLLISAPDPLYRNLREVIDMLDQRRAQVVIESLIVEVGEDDATEFGVQWQAGNLG 479
           D   NTL +       R   +++   DQ   +VV+E  ++EV      + G+QW      
Sbjct: 303 DERLNTLTMRDTSDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRILDLGLQWP----- 357

Query: 480 GKGGFGGVNLGGSGVNSTPTSKTSIDVLPKGLNVGLVDGTVDIPGIGKVLDLKVLARALK 539
               FG ++  G+ V+        +D L KG+N   +        I      K+ A+   
Sbjct: 358 --NTFGVLSDDGNPVSV-------LDQL-KGINSSRIS-------IAPAPQAKINAQ--- 397

Query: 540 SKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKL 599
                N L++P +   + E A I +GQ +P ++ + V    G      ++V   +VGLKL
Sbjct: 398 -DKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVIT--ESVTYLDVGLKL 454

Query: 600 NVRPQISEGGTVKLDIYQEVSTVDERASVTAGTV---TNKRAIDTSILLDDGQIMVLGGL 656
            V+P +     V + +  EVS      +   GT+    + R   TS+ L DG+  VL GL
Sbjct: 455 EVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDGETQVLAGL 514

Query: 657 LQDGYSQSNDAVPWLSDIPGLGALFRNEKRSVSKTNLMVFLRPYIIRDSGAGRSITLNRY 716
           +++ ++ S + +P L DIPGLG LF + K  +SK+ L++ + P I+R+        +   
Sbjct: 515 VRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLPYQSPSDM--- 571

Query: 717 EFMRRAQGGLQPEHSWAMPDVQAP-QLPSVEKAIPGQQGPRAVIRAVPQ 764
           EF    +  +Q      +P +  P   P+ E+ +   Q   A +   P+
Sbjct: 572 EFSTGTESAMQVRQMAPLPPMDVPGNAPTTEEPVVDSQMAVAPVNGSPR 620



 Score = 28.9 bits (63), Expect = 9e-04
 Identities = 32/178 (17%), Positives = 78/178 (43%), Gaps = 14/178 (7%)

Query: 87  DQPVQLNFVDADIQAVVRALSRATGQQFLVDPRVKGNL-TLVSEGQVPAHQAYDMLLAAL 145
           ++PV L F DA+++ +   LS+  G  F+ D  ++ ++   +   +V    A  +LL   
Sbjct: 185 ERPVTLEFRDANLKTIFEVLSQVAGINFIFDKDLRPDMKATIFVREVRIEDAIALLLEQN 244

Query: 146 RMQGFSVVDVGGVAQVVPEADAKLLGGPIYTAGSSGMQTRTFRLQYENAVNLIPVLRPIV 205
           +++   V D      V P++  K       T     +  RTF L   +A   + +++ ++
Sbjct: 245 QLRQKIVND--NTVMVYPDSPQK-------TKDYQELVMRTFYLTSIDANTALNMVKTML 295

Query: 206 SPNNPINAYPGNNSIVITDYAENLARVAQIINGIDTPS---AIDTDVVRVQNGIAVDI 260
              + +      N++ + D ++ +    +++   D  +    ++ +V+ V     +D+
Sbjct: 296 KTRD-VFVDERLNTLTMRDTSDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRILDL 352