Pairwise Alignments

Query, 181 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 186 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

 Score =  111 bits (278), Expect = 6e-30
 Identities = 62/169 (36%), Positives = 100/169 (59%), Gaps = 4/169 (2%)

Query: 1   MKDTGHSTMVSLFLASYEDFKVRLRKRLGSEDLANDVLHETYLRVDRMEVPPN----LAQ 56
           M +   ST+ +  +A Y + + +L + +GS D A D + ET+LR+       +    +  
Sbjct: 1   MNEGMSSTLRARMVARYVELRSKLERIVGSRDDAADAMQETWLRLSTTSSSTSDGGTVNN 60

Query: 57  PNAYLYRMALNIAADRRQADARLLTGSEVEELLQSADEAQDPSRVVGGQKEIQSLVKALY 116
            +AYL RMA NIA D+ + +  LL   E++EL+   DE  DP R+   + ++Q+L + L 
Sbjct: 61  ADAYLLRMAANIATDQYRQNNVLLVHGEIDELMHIVDEVSDPERIASARSDVQALSQVLG 120

Query: 117 ELPARRRKILIAARLEEAPHLEISQRFGISTRMVEKEIKAALGHCAKRL 165
            +P RRR+IL+AAR+E   + EI++RF +S   VEKE++AAL  C + L
Sbjct: 121 RMPRRRREILVAARVEGQLNDEIARRFDVSLSTVEKELRAALEFCKQHL 169