Pairwise Alignments

Query, 181 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 220 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 88.6 bits (218), Expect = 7e-23
 Identities = 47/146 (32%), Positives = 82/146 (56%), Gaps = 1/146 (0%)

Query: 15  ASYEDFKVRLRKRLGSEDLANDVLHETYLRVDRMEVPPNLAQPNAYLYRMALNIAADRRQ 74
           A+Y+    RL ++LG  DLA++ LH+ +LR+   +     A P+AY+YR+A N+A D  +
Sbjct: 72  ANYQALHRRLERQLGCADLASECLHDAWLRLGERQPRETPANPDAYIYRVACNLAMDGMR 131

Query: 75  ADARLL-TGSEVEELLQSADEAQDPSRVVGGQKEIQSLVKALYELPARRRKILIAARLEE 133
              R +    + E++   AD    P  +   + E+ ++ +A+  LP R R +L+A R  E
Sbjct: 132 ERKRWMGLNEDCEDVDVIADLQPGPDMIAEARSEVAAVDRAMQGLPGRHRAVLVALRWHE 191

Query: 134 APHLEISQRFGISTRMVEKEIKAALG 159
               E+++R G+S R V+  ++ ALG
Sbjct: 192 MSRQEVARRHGVSLRKVDTALRQALG 217