Pairwise Alignments

Query, 181 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 186 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score =  188 bits (478), Expect = 4e-53
 Identities = 95/181 (52%), Positives = 130/181 (71%)

Query: 1   MKDTGHSTMVSLFLASYEDFKVRLRKRLGSEDLANDVLHETYLRVDRMEVPPNLAQPNAY 60
           M D+  + + +LFLA Y  F+  L+ RLGSEDLAND L E YLRV+   V   +  P+AY
Sbjct: 1   MPDSIKAALRALFLARYAQFRKHLQIRLGSEDLANDALQEAYLRVENTNVRSAVRYPSAY 60

Query: 61  LYRMALNIAADRRQADARLLTGSEVEELLQSADEAQDPSRVVGGQKEIQSLVKALYELPA 120
           L+R+ALN+A D+R++++RLL+  EVEEL   ADE  DP+R    + E+++L +AL ELP 
Sbjct: 61  LFRIALNVAEDQRKSNSRLLSVGEVEELYDMADEMADPARGAEARNELEALERALAELPR 120

Query: 121 RRRKILIAARLEEAPHLEISQRFGISTRMVEKEIKAALGHCAKRLERKVIQRFGPGAGKP 180
           RRR I++AAR++E PH +I+ R+G+S R VEKE++A L HC +RL R  IQRFGPGAGK 
Sbjct: 121 RRRAIVLAARVDEMPHKDIAARYGVSARTVEKELRAGLEHCCERLGRDFIQRFGPGAGKQ 180

Query: 181 S 181
           S
Sbjct: 181 S 181