Pairwise Alignments

Query, 181 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 170 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

 Score = 55.1 bits (131), Expect = 6e-13
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 10/149 (6%)

Query: 24  LRKRLGSEDLANDVLHETYLRVDRMEVPPNLAQPNAYLYRMALNIAAD---RRQADARLL 80
           LR+RLG    A D+  +T++RV        + +P AYL  +A  +  +   RR+ +   L
Sbjct: 25  LRRRLGDGHTAADLTQDTFVRVISGGQAQAIQEPRAYLTTLAQRVLYNFWRRRELERAWL 84

Query: 81  TGSEVEELLQSADEAQDPSRVVGGQKEIQSLVKALYELPARRRKILIAARLEEAPHLEIS 140
                    Q  + A  P      ++ ++++ + L  LP + R+  +  RLE   H +I+
Sbjct: 85  DALAA----QPQELAPSPETYALVREAVETIDRWLDGLPPKVREAFLLRRLEGLAHADIA 140

Query: 141 QRFGISTRMVEKEIKAALGH---CAKRLE 166
            R GIS   VE+ +K A+ H   C  +LE
Sbjct: 141 VRMGISITSVERYVKQAIVHLYTCPAQLE 169