Pairwise Alignments

Query, 181 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 191 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 58.5 bits (140), Expect = 7e-14
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 3/171 (1%)

Query: 10  VSLFLASYEDFKVRLRKRLGSEDLANDVLHETYLRV-DRMEVPPNLAQPNAYLYRMALNI 68
           V +F A     +  + +R+G    A+D++ E +LR   R EV   +   + YL R A N+
Sbjct: 22  VQVFQAQRARMEALVSRRVGCRATASDLVQELFLRFWRRPEV--KVEALDTYLLRCAGNL 79

Query: 69  AADRRQADARLLTGSEVEELLQSADEAQDPSRVVGGQKEIQSLVKALYELPARRRKILIA 128
           A D  ++++     +E    +  A  AQ P + V    ++Q +   L  LP R R+I + 
Sbjct: 80  AIDHLRSESSRERVAEAAVPVSEASLAQAPEQAVEVDHDLQRIEATLRALPERTRQIFLL 139

Query: 129 ARLEEAPHLEISQRFGISTRMVEKEIKAALGHCAKRLERKVIQRFGPGAGK 179
            R+    + EI++   +S   VEK +  AL  C   +         PG+ +
Sbjct: 140 NRIHGCKYSEIAKAMQLSQSAVEKHMMRALEACKASVAEPASTPRRPGSAR 190