Pairwise Alignments

Query, 181 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

 Score = 57.0 bits (136), Expect = 2e-13
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 22  VRLRKRL-GSEDLANDVLHETYLRVDRM-EVPPNLAQPNAYLYRMALNIAAD--RRQADA 77
           V++  R+ G    A DV+ + + R+    ++  +     +YL+++  N+A D  R+QA  
Sbjct: 26  VKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAIDHYRKQAME 85

Query: 78  RLLTGSEVEELLQSADEAQDPSRVVGGQKEIQSLVKALYELPARRRKILIAARLEEAPHL 137
              +GSE EE +    +   P      +  +  + +AL ELP R R      RL   P  
Sbjct: 86  LKYSGSE-EEGMNVVVQNASPEATHINRAALNDIAEALNELPPRTRYAFEMYRLNGVPQK 144

Query: 138 EISQRFGISTRMVEKEIKAALGHCAKRLERK 168
           +I++  G+S  +V   I+ AL HC K   R+
Sbjct: 145 DIAKELGVSPTLVNFMIRDALVHCRKTASRQ 175