Pairwise Alignments

Query, 181 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 76.3 bits (186), Expect = 3e-19
 Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 8/155 (5%)

Query: 17  YEDFKVRLRKRLGSEDLANDVLHETYLRVDRMEVPPNLAQPNAYLYRMALNIAADRRQ-- 74
           Y +    L  RLGS   A DV H+ YLRV        +  P A+LYR ALN+  DR +  
Sbjct: 5   YRELVSFLSARLGSRQAAEDVAHDAYLRVLERTGSEQIEHPRAFLYRTALNLVVDRHRRQ 64

Query: 75  --ADARLLTGSEVEELLQSADEAQDPSRVVGGQKEIQSLVKALYELPARRRKILIAARLE 132
               A  L   + +  L S++   D    +   + +  + KAL EL    R   +  ++E
Sbjct: 65  LVRQAEPLDALDADSRLHSSELQHD----LQLDQRLALMQKALDELSRPCRDSFLLRKIE 120

Query: 133 EAPHLEISQRFGISTRMVEKEIKAALGHCAKRLER 167
              H +I++R GIS  +VEK I  A+ HC  R+ +
Sbjct: 121 GLSHQQIAERLGISRSLVEKHIVNAMKHCRVRMRQ 155