Pairwise Alignments

Query, 181 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 75.5 bits (184), Expect = 1e-18
 Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 6/165 (3%)

Query: 7   STMVSLFLASYEDFKVRLRKRLGSEDLANDVLHETYLR---VDRMEVPPNLAQPNAYLYR 63
           S +++ F   Y+D    L +R+     A DV  ETYL+   +D   VP  +    ++++R
Sbjct: 7   SGLLASFQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVP--VLHARSFIFR 64

Query: 64  MALNIAADRRQADARLLTGSEVEE-LLQSADEAQDPSRVVGGQKEIQSLVKALYELPARR 122
           +A N+A D  + + R+    +  +   + A  A  P   +  ++ +Q L +AL +LP   
Sbjct: 65  VAGNLAIDALRREQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDNA 124

Query: 123 RKILIAARLEEAPHLEISQRFGISTRMVEKEIKAALGHCAKRLER 167
           R+ L+  R+E     +++QR G+S  MV K I  AL HC  RL++
Sbjct: 125 RQALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHCRGRLKQ 169