Pairwise Alignments

Query, 181 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 61.6 bits (148), Expect = 7e-15
 Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 10/166 (6%)

Query: 1   MKDTGHSTMVSLFLASYEDF-KVRLRKRLGSEDLANDVLHETYLRVDRMEVPPNLAQPNA 59
           + DT   T V+L   S+  + +  LR R+G  + A D+  +T++R+ R      L +P A
Sbjct: 3   INDTLKPTEVALLYQSHHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQMSPLKEPRA 62

Query: 60  YLYRMALNIAAD--RRQADARLLTGSEVEELLQSADEAQDPSRV--VGGQKEIQSLVKAL 115
           YL  +A  +  D  RR+A  R       +E L    EA+ PS    +     ++ L +AL
Sbjct: 63  YLSSIARGLMIDQFRRRALERAY-----QEGLAHLPEAEVPSEEDKLVILDSLERLDRAL 117

Query: 116 YELPARRRKILIAARLEEAPHLEISQRFGISTRMVEKEIKAALGHC 161
            +L  R R+  + A+L+    ++++QR G+S   VE+++  ALG C
Sbjct: 118 QQLKPRVRQAFLLAQLDGLSIVQVAQRLGVSRATVERDLAKALGAC 163