Pairwise Alignments

Query, 410 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 400 a.a., Uncharacterized MFS-type transporter YtbD from Variovorax sp. SCN45

 Score = 74.3 bits (181), Expect = 6e-18
 Identities = 81/313 (25%), Positives = 137/313 (43%), Gaps = 26/313 (8%)

Query: 20  LCASLVSIGLARFAYTPLIPTLIQAQWFSANDVVYLGAANLVG--YLIGALIGRPIAQRT 77
           L  S  +IG   F    LIPT+      +A+  + L +A L+   Y +G  IG P+    
Sbjct: 8   LTLSAFAIGTTEFVIVGLIPTV------AADLHIGLPSAGLLVSLYALGVAIGAPVLTAL 61

Query: 78  SNKTALRMMMVAVTLAFFACGFPL-----SVVWFFAWRLLSGIAGGAIMVLVAATVLPHV 132
           + K   + +++++ +A F  G  L     S     A R+L+G+A G    + +      V
Sbjct: 62  TGKLPRKALLLSL-MALFTVGNLLAWQAPSYESLIAARVLTGLAHGVFFSIGSTIATGLV 120

Query: 133 PAARRGLASGAIFLGIGLGIAGS---GTLVPPLLNLGLQQTWFGLGLLALVLTGASWFAW 189
           P  +   A   +F G+ + +      GT +    + G ++T+  +  L +V    SW   
Sbjct: 121 PKEKAASAIAIMFTGLTVALVTGVPLGTFIGQ--HFGWRETFLAVSALGVVAFIGSWVFV 178

Query: 190 PTGTLHEAAAPTGTSAPTPSG--VYLLFAQYAFMAAGLVPAMVFLVDYVARGLGDGAHIG 247
           P+   H   A     A   +   + L++A+ A    G      FL   +    G  A  G
Sbjct: 179 PSNIRHTPPASLAQQAKVLAEPRLLLVYAKTAIGYGGSFIPFTFLAPILTEVSGFSA--G 236

Query: 248 AMIWVM--YGLGAIVGPVTYGFLADKLGARLSIRVVLVVQAIAVGLLPFTGSFTALAVLA 305
           A+ WVM  YG+   VG +  G LAD+ G   +++++  + A  + L  F      LA+LA
Sbjct: 237 AVGWVMLVYGVSVAVGNIWGGKLADRRGPIPALKIIFALLAAVLLLFNFAAPHKWLALLA 296

Query: 306 VVL-GSFPPGIVP 317
           V++ G+   G VP
Sbjct: 297 VLMWGAVAFGNVP 309