Pairwise Alignments

Query, 410 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 506 a.a., MFS permease from Agrobacterium fabrum C58

 Score = 53.9 bits (128), Expect = 1e-11
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 3/137 (2%)

Query: 18  AGLCASLVSIGLARFAYTPLIPTLIQAQWFSANDVVYLGAANLVGYLIGALIGRPIAQRT 77
           A +C S +  GL   +   ++PTL +        + ++  A  +G  +  +    +A R 
Sbjct: 18  AAVCLSALMFGLEISSVPAILPTLEEVLQADFRQLQWIMNAYTIGVTMVLMATGALADRF 77

Query: 78  SNKTALRMMMVAVTLAFFACGFPLSVVWFFAWRLLSGIAGGAIMVLVAATVLPHVPAAR- 136
             K      +VA  L+  ACG   SV      R L G++GGA++V   A +      AR 
Sbjct: 78  GRKRVFIASIVAFALSSLACGMTQSVSVLIGARFLQGLSGGAMLVCQIAILSHQFRTARE 137

Query: 137 RGLASG--AIFLGIGLG 151
           RG+A G   I  G+GLG
Sbjct: 138 RGMAFGWWGIVSGVGLG 154



 Score = 29.6 bits (65), Expect = 2e-04
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 19/127 (14%)

Query: 46  WFSAN---DVVYLGAANLVGYLIGALIGRPIAQRTSNKTALRMMMVA----VTLAFFACG 98
           WF A    D V  G   L+ Y + AL+  P+A+R S +    +++ A    + L F    
Sbjct: 294 WFQAGLGYDSVTAGLG-LLAYTLPALVMPPLAERLSLRYQPHLVIPAGLFTIGLGFMLMK 352

Query: 99  FPLSV-----VWFFAWRLLSGIAGGAIMVLVAATVLPHVPAARRGLASG------AIFLG 147
           F   +     +      +L+GI  G     V  T    V  AR G+ASG       I L 
Sbjct: 353 FGSGIENASWLTMLPGCILAGIGLGLTNTPVTNTTTGAVSPARSGMASGIDMSARMISLA 412

Query: 148 IGLGIAG 154
           I + I G
Sbjct: 413 INIPIMG 419



 Score = 25.8 bits (55), Expect = 0.003
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 219 AFMAAGLVPAMVFLVDYVARGLGDGAHIGAMIWVMYGLGAIVGPVTYGFLADKLGARLSI 278
           A M     P M++L  +   GLG  +    +  + Y L A+V P     LA++L  R   
Sbjct: 278 AAMNISFWPFMIYLPIWFQAGLGYDSVTAGLGLLAYTLPALVMPP----LAERLSLRYQP 333

Query: 279 RVVLVVQAIAVGL 291
            +V+      +GL
Sbjct: 334 HLVIPAGLFTIGL 346