Pairwise Alignments

Query, 312 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 325 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Variovorax sp. SCN45

 Score =  156 bits (394), Expect = 7e-43
 Identities = 99/310 (31%), Positives = 164/310 (52%), Gaps = 7/310 (2%)

Query: 3   SVALMVYPNFQSLSLSLGS-VFECANLLRGEPAYEFHLVSESGGAVMTSQGFSVNTT--- 58
           ++A++ +       LS+   VF       G P +   + +   GA+ T+ GF++      
Sbjct: 8   TIAVVAFDGISPFHLSVPCMVFGEDRTETGAPRFRLRVCAPEPGALRTNAGFTLGVEHGL 67

Query: 59  -PIRPEGYDTLIVSGYLEFRLPEANLLELVKAASAQSRRVASLCMGIFVLAEAGLLEGKR 117
             IR      ++ S   +       L+  ++AA  +   V  LC+G FVLAEAGLL+G+ 
Sbjct: 68  EAIR-HARIVVVPSWRDDCAAAPPALIRALQAAHRRGATVVGLCLGAFVLAEAGLLDGRP 126

Query: 118 TTTHWIHAPAFRKRYPDIRLEEDKLFIVDGHVWTGAGMSAGVDLALAMVENDLGSDLARR 177
            TTHW  APAF ++YP +RL+ + L++ DG V T AG +AG+D  L ++    G++ A R
Sbjct: 127 ATTHWKLAPAFARQYPKVRLQPEVLYVDDGSVLTSAGTAAGIDCCLHLLRVRHGAETANR 186

Query: 178 IARKLVIA-QRRGSEQSQLSALLELDPKSDRVQLALAYARENLTHDLSVEALADVARLSP 236
            AR++V+A  R+G +   +   +    + DR+   L +  ++L     ++ LA  A +S 
Sbjct: 187 AARRMVVAPHRQGGQAQYIEQPVPATGERDRLAPLLEWLGKHLDKPHELDDLARRALMSR 246

Query: 237 RQFSRVFREETGQTPAKAIESLRVEAARAMMETSRHPVEVVARETGFGDRERMRQAFLRA 296
           R F+R FRE TG T  + +++ R+  A+ ++ET+  PVE VA   GFG    +R+ FL A
Sbjct: 247 RNFTRRFRESTGTTVGQWVQNQRLALAQRLLETTDEPVERVATGAGFGSAVSLRKHFLSA 306

Query: 297 FGQPPQVMQQ 306
           F   P   ++
Sbjct: 307 FKVSPMAYRR 316