Pairwise Alignments

Query, 312 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 324 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Variovorax sp. SCN45

 Score =  170 bits (430), Expect = 5e-47
 Identities = 111/307 (36%), Positives = 163/307 (53%), Gaps = 8/307 (2%)

Query: 3   SVALMVYPNFQSLSLSLG-SVFECANLLRGEPAYEFHLVSESGGAVMTSQGFSV----NT 57
           ++A++  P  Q L +S    VF  ANL     AY   +V+   G V +S G  +      
Sbjct: 6   TIAILAMPGVQLLDVSGPLDVFAEANLQAKAQAYRLLVVASKRGPVRSSSGVRLMPDATI 65

Query: 58  TPIRPEGYDTLIVSG--YLEFRLPEANLLELVKAASAQSRRVASLCMGIFVLAEAGLLEG 115
                E   TL+V+G  +      +AN+   +K  + + RR  S+C G FVLA+AGLL G
Sbjct: 66  GDAMHEPIHTLLVAGSPHAADAASDANVSAWLKQQTPKLRRFGSVCSGAFVLAQAGLLNG 125

Query: 116 KRTTTHWIHAPAFRKRYPDIRLEEDKLFIVDGHVWTGAGMSAGVDLALAMVENDLGSDLA 175
           +R TTHW  A    + YP + ++ D + + DG + T AG++AG+DL+LA+VE DLG D+A
Sbjct: 126 RRVTTHWAVAEQLARDYPSVTVDADAIHVRDGRLRTAAGVTAGLDLSLALVEEDLGRDIA 185

Query: 176 RRIARKLVIAQRRGSEQSQLSALLELDPKS-DRVQLALAYARENLTHDLSVEALADVARL 234
            ++A +LV+  +R   Q Q S   E  P     +Q    +   N   D  V  LA    L
Sbjct: 186 MKVAAQLVMFFKRPGGQMQFSRKGEAAPTGRSALQEVQRWIAANPAQDHGVANLAARMGL 245

Query: 235 SPRQFSRVFREETGQTPAKAIESLRVEAARAMMETSRHPVEVVARETGFGDRERMRQAFL 294
           S R F+R+FR+E G TPA  +E +RV AAR ++E      + VA + GF D + +R+AF 
Sbjct: 246 SERHFARLFRQEVGVTPAAWVEDVRVTAARRLLEAGDAAPKQVAFQCGFADADTLRRAFQ 305

Query: 295 RAFGQPP 301
           R  G  P
Sbjct: 306 RHVGITP 312