Pairwise Alignments

Query, 312 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 318 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Kangiella aquimarina DSM 16071

 Score =  154 bits (388), Expect = 3e-42
 Identities = 94/312 (30%), Positives = 167/312 (53%), Gaps = 9/312 (2%)

Query: 3   SVALMVYPNFQSLSL--SLGSVFECANLLRGEPAYEFHLVSESGGAVMTSQGFSV--NTT 58
           ++A +VY + + L +  S  + +E +   +   +Y   +V      V++  G  +  NTT
Sbjct: 5   TIAFLVYNDMELLDMAGSQTAFYEASQYAK--ESYSVEVVGFDEQLVVSEAGTQIQPNTT 62

Query: 59  PIRPEGYDTLIVSGYLEFR--LPEANLLELVKAASAQSRRVASLCMGIFVLAEAGLLEGK 116
               +   TL++ G    R  L  A+ +  ++   A+ +RV S+C G F+LAE GL +G 
Sbjct: 63  IDALQDCHTLVIPGGKGARHNLLTADSVAKLRQLMARCQRVVSICTGAFLLAETGLPKGT 122

Query: 117 RTTTHWIHAPAFRKRYPDIRLEEDKLFIVDGHVWTGAGMSAGVDLALAMVENDLGSDLAR 176
           +  THW       KR+P++++++  L++ DG  W+ AG++A +DL L ++E DLG   A 
Sbjct: 123 QVATHWAFVEELAKRFPELQVDKKSLYVEDGKYWSSAGVTACIDLTLRLIELDLGIKAAM 182

Query: 177 RIARKLVIAQRRGSEQSQLSALLELD-PKSDRVQLALAYARENLTHDLSVEALADVARLS 235
            +A+ +V+  +R   Q Q S  L L  P  +R+   + + + NL   ++VE +AD A +S
Sbjct: 183 HVAQHMVVYLKRTGSQQQYSDFLSLQTPSDERLISIVNWLKHNLDKQITVEMIADKAHMS 242

Query: 236 PRQFSRVFREETGQTPAKAIESLRVEAARAMMETSRHPVEVVARETGFGDRERMRQAFLR 295
            RQ  R F +E G+ PA  +E LR++ AR ++ +S   ++ +A   G+   +  ++AF R
Sbjct: 243 ERQLHRSFVKEVGKPPAHYLEELRMDLARTLLVSSDENLKKIALSVGYRSYDGFKRAFER 302

Query: 296 AFGQPPQVMQQA 307
            F   P   +QA
Sbjct: 303 NFSISPLRYRQA 314