Pairwise Alignments

Query, 427 a.a., porin from Pseudomonas simiae WCS417

Subject, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  211 bits (537), Expect = 3e-59
 Identities = 131/398 (32%), Positives = 196/398 (49%), Gaps = 33/398 (8%)

Query: 40  KNYYFNRDYREDAG--QSKREEWAQGFILNLKSGFTEGTVGFGVDVVGMLGLKLDSSPDR 97
           +NY+ + D+R  +G  Q+ R+EWAQGFI  ++SGFTEGTVG G+D  G LGLKLD     
Sbjct: 35  RNYFLHSDFRSPSGSGQNYRQEWAQGFIGEVRSGFTEGTVGVGIDAHGFLGLKLDGGRGH 94

Query: 98  SGSGLLSRDNDATPGKPSYSKRAHDEYSKYGVTGKVRFAQSELRSGYLLPDLPTLQPNTS 157
           SG+GLL RD+D          RA  EYS  G   K++   ++LR G ++ + P       
Sbjct: 95  SGTGLLPRDSDG---------RAESEYSSAGAALKMQLGNTQLRYGEMMVETPVFDTGDK 145

Query: 158 RLFPQTFRGTQVTSTDIAGLALIGGQIDQTKQRESTEYEDMGLTSQSGAYKSTAKSDRFR 217
           RL P+   G  V +TD     L  G+      ++++   D         Y +T  +    
Sbjct: 146 RLHPEYATGWWVENTDQPDWRLQAGRFTAFNNQDNSSTHD-----DFSGYGATTHNRAIS 200

Query: 218 FAGGDYKLTPGMTLSYHFAQLEDIYQQHFVGLKNSFALGGGTLKTDIRYFDADKSGAGLA 277
            AG  +        + +  QLE+ ++Q ++ L     L  G  + D   +    +G   A
Sbjct: 201 LAGATFAPNGPFGAALYAGQLENTWRQAYLNLN----LAQGNWRLDGNLYKTRDTGNASA 256

Query: 278 GKVDNRALSTRAMFSYKGHSLGGGYQEQYGDTPFTYVDGTNTYLFSEYQLSNFSQTNERV 337
           G +D  A S  A +S+   +L   YQ+  GDTPF +V G + YL +  + ++F+   E  
Sbjct: 257 GAIDTLAYSLLAKYSFGAQALSVAYQKVEGDTPFDFVGGDSIYLANAIKYADFNGPGEHS 316

Query: 338 WHARYDFDFAALGVPGLTFSTRWAKG----------DQAQVKGFAGEGREWERDIDLGYV 387
           W  RYD +FA LG PGL+   R+  G            A V  +   G+ WERDIDL YV
Sbjct: 317 WQLRYDLNFATLGAPGLSLMGRYVSGRGIDGSHAPAGGAYVNQYGDGGKHWERDIDLKYV 376

Query: 388 FQSGTLKGVSLRWRNGLSKANYLR---DMNENRVIVGY 422
            QSG  K +SL + +   +AN  +   D++   +I+ Y
Sbjct: 377 VQSGAAKDLSLSFSHVSHRANQAQAGDDIDRIYLIIEY 414