Pairwise Alignments

Query, 427 a.a., porin from Pseudomonas simiae WCS417

Subject, 450 a.a., putative Porin from Pseudomonas putida KT2440

 Score =  212 bits (540), Expect = 2e-59
 Identities = 138/437 (31%), Positives = 216/437 (49%), Gaps = 52/437 (11%)

Query: 29  FIKDSKADLDLKNYYFNRDYREDAGQSKREEWAQGFILNLKSGFTEGTVGFGVDVVGMLG 88
           F+ DSKA +  +  Y++ D R   G  +R+    G  L+ +SG+TEG VG G+D+  + G
Sbjct: 28  FLDDSKASISSRTLYYDGDQRSTGGADQRQTLT-GLRLDFQSGYTEGVVGLGLDLQALAG 86

Query: 89  LKLDSSPDRSGSGLLSRDNDATP-GKPSYSKRAHDEYSKYGVTGKVRFAQSELRSGYLLP 147
             L        +  ++  +  T  G P       D +S+ G   + +++++EL++G  L 
Sbjct: 87  FTLSGGTSPHNASTVNTVSPVTTDGSPV------DNWSRIGGNARFKYSKTELKAGNALT 140

Query: 148 -DLPTLQPNTSRLFPQTFRGTQVTSTDIAGLALIGGQIDQTKQRESTEYEDMGLTSQSGA 206
            +LP L  N  RL P +F+G  +TS +   L L GG +++   R S+ +  +      G 
Sbjct: 141 FNLPVLISNDGRLLPASFQGAALTSNEFENLTLNGGFLNRAIGRASSNWAGISGGGAKG- 199

Query: 207 YKSTAKSDRFRFAGGDYKLTPGMTLSYHFAQLEDIYQQHFVGLKNSFALG-GGTLKTDIR 265
                 SD F FAGGD+ +   + L Y++A LED Y Q+F+GL +SF +G G +L TD+R
Sbjct: 200 ------SDGFAFAGGDWNVRKNLKLQYYYANLEDYYSQNFLGLIHSFDMGVGQSLTTDLR 253

Query: 266 YFDAD-------------KSGAGLAGKVDNRALSTRAMFSYKGHSLGGGYQEQYGDTPFT 312
           YF +D             ++G    GK+DN   S    +   GH+L  G+Q+    + F 
Sbjct: 254 YFKSDSDGKNGTDSRYALRNGYNENGKIDNTTWSLAFTYKAGGHALTLGHQQVSDKSGFA 313

Query: 313 YVDGTNT----------------YLFSEYQLSNFSQTNERVWHARYDFDFAALGVPGLTF 356
            V+ +N                 YL+++  +++F++  E      Y +DFAALGVPGL  
Sbjct: 314 TVNSSNVVDGRGRPEGEGGVQSLYLYTDVMVNSFTRAGENSTFGLYSYDFAALGVPGLKA 373

Query: 357 STRWAKGDQAQVKGFAGEGR--EWERDIDLGYVFQSGTLKGVSLRWRNGLSKA----NYL 410
              +  G   +  G    GR  EWE D  L YV QSGT KG+    R G+ +     + L
Sbjct: 374 GWTYVSGKDIRGTGNTTTGRYNEWESDYRLDYVLQSGTFKGLGFTLRKGVFRTGLPDSTL 433

Query: 411 RDMNENRVIVGYTVALW 427
           +D ++ R  V YT ALW
Sbjct: 434 KDQDQVRFFVNYTYALW 450