Pairwise Alignments

Query, 427 a.a., porin from Pseudomonas simiae WCS417

Subject, 433 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  345 bits (885), Expect = 2e-99
 Identities = 180/419 (42%), Positives = 257/419 (61%), Gaps = 18/419 (4%)

Query: 20  LLCAPAQAD---FIKDSKADLDLKNYYFNRDYRE-----DAGQSKREEWAQGFILNLKSG 71
           LLCA   A    F++D+ A ++ +N YFNRD+R+       G SKREEWAQGFILN++SG
Sbjct: 22  LLCAGVNAQAAGFLEDASAKIEARNVYFNRDFRDGYSSSSQGASKREEWAQGFILNVQSG 81

Query: 72  FTEGTVGFGVDVVGMLGLKLDSSPDRSGSGLLSRDNDATPGKPSYSKRAHDEYSKYGVTG 131
           +T+G VG GVD +GM G KLDSSP  S SGLL       P      +R+ D+Y+K G+  
Sbjct: 82  YTQGPVGVGVDALGMFGFKLDSSPADSNSGLL-------PSSGHDPRRSADQYAKMGLAA 134

Query: 132 KVRFAQSELRSGYLLPDLPTLQPNTSRLFPQTFRGTQVTSTDIAGLALIGGQIDQTKQRE 191
           KV+ + + L+ G ++PD+P L+ N  RL P  F G  +TS ++  L     ++D+   R+
Sbjct: 135 KVKVSNTVLKYGSMMPDVPLLKYNDGRLLPTLFHGAMLTSEELHDLKFTLARLDKYTARD 194

Query: 192 STEYEDMGLTSQSGAYKSTAKSDRFRFAGGDYKLTPGMTLSYHFAQLEDIYQQHFVGLKN 251
           ST+ +D+ +  ++  Y    ++D F  AG DY+     +  Y  A+LE+IY+QHF+GL  
Sbjct: 195 STDRQDIRVHCKNKRYACDTEADHFDLAGVDYRFNERFSAQYQVAKLENIYRQHFLGLVA 254

Query: 252 SFALGGGTLKTDIRYFDADKSGAGLAGKVDNRALSTRAMFSYKGHSLGGGYQEQYGDTPF 311
           S  L  G+L  D+R   +D  G   AG++D+RA S    +S  GH L  G+Q  YG++  
Sbjct: 255 SQPLPVGSLSADMRLIKSDDIGNARAGEIDHRAFSGMLGYSLGGHKLSAGWQRMYGNSAM 314

Query: 312 TYVDGTNTYLFSEYQLSNFSQTNERVWHARYDFDFAALGVPGLTFSTRWAKGDQAQVKGF 371
            Y+DG+N YL +  Q+++F+   ER W  RYD+DF ALGVPGLTF TR+  GD  +V G 
Sbjct: 315 PYLDGSNPYLVNYAQVNDFAAAQERSWQVRYDYDFKALGVPGLTFFTRYINGDNIKVPGS 374

Query: 372 AGEGREWERDIDLGYVFQSGTLKGVSLRWRNGLSKANY---LRDMNENRVIVGYTVALW 427
           + EG+EWERD +  Y  QSGT K VS+R RN   ++NY    RDM+E RVIV Y  +++
Sbjct: 375 SVEGKEWERDTEFKYQVQSGTFKDVSVRLRNSTYRSNYERWARDMDETRVIVSYNFSIF 433