Pairwise Alignments

Query, 427 a.a., porin from Pseudomonas simiae WCS417

Subject, 447 a.a., tyrosine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  206 bits (524), Expect = 1e-57
 Identities = 144/450 (32%), Positives = 219/450 (48%), Gaps = 47/450 (10%)

Query: 8   LILKGVGLMSGGLLCAPAQAD-FIKDSKADLDLKNYYFNRDYRED----------AGQSK 56
           L L GVG     ++ A   AD F++ S   +  +N+YFNRD R+           A    
Sbjct: 13  LALAGVGSQ---VVAAEKSADGFMEGSTLSVLNRNFYFNRDNRDSVAPTHNPSKQADNGY 69

Query: 57  REEWAQGFILNLKSGFTEGTVGFGVDVVGMLGLKLDSSPDRSGS----GLLSRDNDATPG 112
            E W    I   +SGFT+GTVG G+D   MLGLKLD+   R+G      +L  D D    
Sbjct: 70  SEAWGHAVITRFESGFTQGTVGVGLDAFAMLGLKLDTGGGRNGGRSSFDVLPVDRDG--- 126

Query: 113 KPSYSKRAHDEYSKYGVTGKVRFAQSELRSGYLLPDLPTLQPNTSRLFPQTFRGTQVTST 172
                 +A DEY+K G   K+R   + L+ G + P  P +    SRL P++FRG  + ++
Sbjct: 127 ------QARDEYTKVGGAAKLRLFDTVLKVGDVFPANPVVAAGDSRLLPESFRGVTLENS 180

Query: 173 DIAGLALIGGQIDQTKQRESTEYEDMGLTSQSGAYKSTAKSDRFRFAGGDYKLTPGMTLS 232
            I  L L  G++    Q  S++  +  +T     Y     S    + GGDY+L   +++S
Sbjct: 181 SIKDLTLQAGRLHAMSQPMSSDLRENFVT----FYGGPVDSPWIAYGGGDYRLNEHVSVS 236

Query: 233 YHFAQLEDIYQQHFVGLKNSFALGGG-TLKTDIRYFDADKSGAGLAGKVDNRALSTRAMF 291
              ++L+D + Q++ G   S+ L     L     Y+ A   G    G  DN   S +   
Sbjct: 237 LFSSRLKDAWNQYYAGTSLSWPLSEALALIGGFNYYKAVDEGQQRLGAFDNDIWSAKLGV 296

Query: 292 SYKGHSLGGGYQEQYGDTPFTYV-DGTNTYLFSEYQLSNFSQTNERVWHARYDFDFAALG 350
            +  H+L   +Q   GD  F Y+    + +L +  Q S+F+   ER W  RYD + AA G
Sbjct: 297 RFGAHTLALTHQRNNGDDDFDYLRQSDSIFLDNSIQYSDFNAPKERSWMLRYDLNMAAYG 356

Query: 351 VPGLTFSTRWAKGDQAQV---------KGFAG----EGREWERDIDLGYVFQSGTLKGVS 397
           VPGL+F TR+ KG+ A           +  AG    + + WERDI++ YV Q+G  K +S
Sbjct: 357 VPGLSFMTRYGKGNDADYSNANATYMRRDVAGNPLTDQKRWERDIEVKYVVQTGAAKDLS 416

Query: 398 LRWRNGLSKAN-YLRDMNENRVIVGYTVAL 426
           LR R   ++A  +  D++E R+IV Y +++
Sbjct: 417 LRVRQATTRATAFESDLDEVRMIVEYPLSI 446