Pairwise Alignments

Query, 427 a.a., porin from Pseudomonas simiae WCS417

Subject, 449 a.a., putative OprD family outer membrane porin from Pseudomonas putida KT2440

 Score =  238 bits (608), Expect = 2e-67
 Identities = 162/440 (36%), Positives = 232/440 (52%), Gaps = 49/440 (11%)

Query: 20  LLCAPAQAD-----FIKDSKADLDLKNYYFNRDYRED---------AGQSKREEWAQGFI 65
           LL +PA AD     FI  ++  +  +N++F++DYR             QS   EW  G I
Sbjct: 16  LLASPAFADSDDEGFIDGTRVHVLNRNFFFSQDYRNGDFTLNPNNGERQSLHREWGHGII 75

Query: 66  LNLKSGFTEGTVGFGVDVVGMLGLKLDSSPDRSGS-----GLLSRDNDATPGKPSYSKRA 120
            NL+SGFT GTVGFGVDV G++GLKLD      G+     G++SR      G+P      
Sbjct: 76  ANLQSGFTRGTVGFGVDVQGLVGLKLDGGNGAVGNGVGVPGIVSRSGSNFDGEPK----- 130

Query: 121 HDEYSKYGVTGKVRFAQSELRSGYLLPDLPTLQPNTSRLFPQTFRGTQVTSTDIAGLALI 180
            D Y K G   KVR   +ELR G + P  P L  +  RL PQT RG    +  + GL+L 
Sbjct: 131 -DSYGKVGTALKVRAFDTELRYGDVSPTSPVLHASDIRLLPQTLRGFIFNNNSLDGLSLQ 189

Query: 181 GGQIDQTKQRESTEYE-DMGLTSQSGAYKSTAKSDRFRFAGGDYKLTPGMTLSYHFAQLE 239
           GG+++ +  R ++ +  D+G T  +G  K    ++   + GGDY+    +TL  H ++L+
Sbjct: 190 GGKLESSSDRNASNHRGDLG-TVYAGRIKG---ANDVVYLGGDYRFNDQLTLRLHSSRLD 245

Query: 240 DIYQQHFVGLKNSFALGGG-TLKTDIRYFDADKSGAGLAGKVDNRALSTRAMFSYKGHSL 298
           D++ Q F  + +   LG   +LKT + Y+    SG  LAG++DN + S  A  +   H  
Sbjct: 246 DVWNQSFFSVDHVQPLGSELSLKTGLNYYRTRDSGQALAGQIDNDSWSVHAGLAAGAHGF 305

Query: 299 GGGYQEQYGDTPFTYVDGTNTY---LFSEYQLSNFSQTNERVWHARYDFDFAALGVPGLT 355
              Y    GDTPF YV   NTY   L +  Q+S+F+  NER W ARYD+DFA LGVPGL+
Sbjct: 306 KLSYTRIDGDTPFDYV--WNTYDLQLDAASQVSDFNNPNERAWEARYDYDFAPLGVPGLS 363

Query: 356 FSTRWAKG---DQAQVKG----FAG--EGREWERDIDLGYVFQSGTLKGVSLRWRNGLSK 406
            + R+ +G   D  +  G    F G  +GR WER++ L YV QSG  K +S        +
Sbjct: 364 LTARYVRGTDIDGTRAGGAYSYFNGTEDGRHWERNLWLKYVLQSGPAKDLSFNLMQATHR 423

Query: 407 --ANYLRDMN--ENRVIVGY 422
              +++ + N  E R+IV Y
Sbjct: 424 VGGDHVAESNVDELRLIVQY 443